Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1284 ATGCCGATTGATACCTCTGCAGTCTCCGGCCAAATTGTGTGTGTCACCGGCGCCGGCGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGATTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGCCTCAAAGCAGCCATTATGGGTTGTCATGGTGTTTTCCACACTGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAACGTCATGACCGCTGCCGCTGAAGCAAACGTCCGACGAGTGGTGTTCACGTCATCGATCGGCACCGTCTATATGAACCCTAACCGAAGCCCGGACGCGGTAGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAAGGGAGTGGATCTTGTGGTGGTAAATCCAATGTTGGTATTGGGGCCTTTGTTGCAAGAAGGTGTGAATGCAAGTGTGATTCATATAATGAAATATTTAACAGGATCAGCAAAAACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCACATGTTTTGGTTTATGAAACTCCTTCAGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTAAAAACTTCTTCCCTCAATATCCTCTTCCTACCAAGTGTTCTGATGAGATAAATCCCAGAAAGAAACCTTACAAGTACACAGTTGAGAAGCTAAAGTCATTAGGAATGGAATTCACACCAATCAAGCAATGCATATATGAAACTGTAAAGAGCCTACAAGACAAGGGTCATCTTCCACTTCCTTCCCAACTTCAACATTGA 990 43.33 MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKEKGVDLVVVNPMLVLGPLLQEGVNASVIHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILKNFFPQYPLPTKCSDEINPRKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQDKGHLPLPSQLQH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25741373 25752637 - CcPI632755_10g012840.1 Cco10g1284 190242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1284 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 315 IPR036291 -
Cco10g1284 329 Gene3D - 3 329 - -
Cco10g1284 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Cco10g1284 329 CDD FR_SDR_e 13 298 - -
Cco10g1284 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Cco10g1284 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0317 Cco-Chr9:2764161 Cco10g1284 Cco-Chr10:25741373 8.50E-149 dispersed
Cco10g0726 Cco-Chr10:10559276 Cco10g1284 Cco-Chr10:25741373 1.40E-63 dispersed
Cco10g1284 Cco-Chr10:25741373 Cco11g1961 Cco-Chr11:32108373 3.30E-73 dispersed
Cco10g1283 Cco-Chr10:25737379 Cco10g1284 Cco-Chr10:25741373 5.10E-114 tandem
Cco10g1284 Cco-Chr10:25741373 Cco10g1285 Cco-Chr10:25763290 2.10E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1284 K09753 - csv:116401668 626.706