Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1285 ATGCCCCTCGCCGCCGCCGTAGCTTCCGGTCAAATTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTGAAGCTTCTTCTTCAAAAGGGTTACACTGTTAGAGGCACTGTAAGAAACCCAGATGATCGGAAGAATGATCATTTGAAAGAGTTAGATGGAGCTGAGGAAAGGTTGACGCTGTACGGTGCTGATCTACTTGATTTCGACAGCCTTAAAGCCGCCATTATCGGTTGCGATGGTGTTTTCCACACGGCGTCTCCGGTGACTGACGACCCCGAAAAGGTGGAGCAGGCAATAATTGGGACGAAAAATGTTATAATGGCGGCGGCGGAGGCCAAGGTCCGGCGAGTGGTGTTCACATCGTCCATTGGAACTATACACATGAACCCTAATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAATACAAAGAACTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAATGGCAGAGGAGAAAGGGGTGGATTTAGTAGTGGTGAATCCGATGTTGGTGCTTGGACCATTATTACAACAAACAATCAATGCAAGTGTAGCTCATATAATGAAGTACTTGACTGGCTCAGTCAAGACATACGTCAATGCAGTTCAAGGATACGTTCATGTTAAGGATGTTGCAAAAGCTCACTTGTTGGTGTATGAGACTCCCTCTGCATTTGGTAGATATATTTGTGTTGAAACTATGCTTCATCGTGGAGAATTGGTTGAAATTTTGGCTAAATTCTTTCCTGAGTATCCCATTCCTACCAAGTGCTCTGACCAGGTGAACCCTAAGAAGAAACCTTACAAATTTAGTGTAAAAAAGCTGAAGGACTTGGGGATGGATCAGTTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAGAGCCTTCAAGAGAAGGGTCATCTTCCACTTCCTTAA 978 45.71 MPLAAAVASGQIVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNPDDRKNDHLKELDGAEERLTLYGADLLDFDSLKAAIIGCDGVFHTASPVTDDPEKVEQAIIGTKNVIMAAAEAKVRRVVFTSSIGTIHMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVAHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLVYETPSAFGRYICVETMLHRGELVEILAKFFPEYPIPTKCSDQVNPKKKPYKFSVKKLKDLGMDQFIPVKQCIYETVKSLQEKGHLPLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25763290 25770176 - CcPI632755_10g012850.1 Cco10g1285 190243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1285 325 Gene3D - 4 325 - -
Cco10g1285 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 317 IPR036291 -
Cco10g1285 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Cco10g1285 325 CDD FR_SDR_e 13 298 - -
Cco10g1285 325 FunFam Cinnamoyl-CoA reductase 1 4 325 - -
Cco10g1285 325 Pfam NAD dependent epimerase/dehydratase family 13 243 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2540 Cco-Chr5:33682271 Cco10g1285 Cco-Chr10:25763290 7.90E-62 dispersed
Cco06g0042 Cco-Chr6:404338 Cco10g1285 Cco-Chr10:25763290 2.30E-50 dispersed
Cco10g1283 Cco-Chr10:25737379 Cco10g1285 Cco-Chr10:25763290 4.60E-99 dispersed
Cco10g1285 Cco-Chr10:25763290 Cco11g1961 Cco-Chr11:32108373 7.10E-68 dispersed
Cco10g1284 Cco-Chr10:25741373 Cco10g1285 Cco-Chr10:25763290 2.10E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1285 K09753 - csv:101219069 617.461