Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1289 ATGGCTGGAGAAACTCCCGATGGCCACTCCTCCGGCAATCCGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGATGAAGCGGCGGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAACTTCTTGGATGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGCGATGCTCAGTTGACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACAGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCGCTTAGAGAACATGTTACCATGGATGCAGTTAGACGCTTTATAGGGAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGCGAGCTTGAGTATATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCTGTCTTAGAAGTCATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATCGGGGGCGTAGTGACCCGGCGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAACACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTGTTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGGTAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCGGCTGTAGGACTAACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTGGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAACAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCAGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCCCAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAATGAATCTCAGGACAGTCAAGACTCTGCAAGGCCACTGGATCCGGAGGTGCTCTCCCAAGATCTGCTGAGGAAGTACATAACTTACTCTAAGTTAAATGTTTTCCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGACGTTGATATGGCAATTCGCGTGTTACTTGATTCTTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTGCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTACCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGATCACGAAATTTATGATCTGAAACCCTTCTTCACGAGCTCTCATTTTTCAAATGCTAATTTTGTTCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA 2835 43.67 MAGETPDGHSSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQLTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERVIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSINESQDSQDSARPLDPEVLSQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR 944
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 25808289 25814164 + CcPI632755_10g012890.1 Cco10g1289 190247

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1289 944 Pfam MCM P-loop domain 496 718 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 Gene3D - 356 406 - -
Cco10g1289 944 FunFam DNA helicase 221 325 - -
Cco10g1289 944 MobiDBLite consensus disorder prediction 1 83 - -
Cco10g1289 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 688 696 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 220 904 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER)
Cco10g1289 944 CDD MCM2 511 837 - -
Cco10g1289 944 SMART mcm 325 839 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 ProSiteProfiles MCM family domain profile. 508 714 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g1289 944 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cco10g1289 944 Gene3D - 488 861 IPR027417 -
Cco10g1289 944 MobiDBLite consensus disorder prediction 115 210 - -
Cco10g1289 944 Pfam MCM N-terminal domain 229 322 IPR027925 -
Cco10g1289 944 Gene3D - 221 325 - -
Cco10g1289 944 MobiDBLite consensus disorder prediction 9 43 - -
Cco10g1289 944 MobiDBLite consensus disorder prediction 57 72 - -
Cco10g1289 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 841 IPR027417 -
Cco10g1289 944 MobiDBLite consensus disorder prediction 727 743 - -
Cco10g1289 944 Gene3D - 329 454 IPR012340 -
Cco10g1289 944 Pfam Mini-chromosome maintenance protein 2 45 168 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 MobiDBLite consensus disorder prediction 723 747 - -
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro)
Cco10g1289 944 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Cco10g1289 944 MobiDBLite consensus disorder prediction 115 159 - -
Cco10g1289 944 FunFam DNA helicase 488 861 - -
Cco10g1289 944 Pfam MCM OB domain 328 455 IPR033762 -
Cco10g1289 944 MobiDBLite consensus disorder prediction 176 191 - -
Cco10g1289 944 FunFam DNA helicase 356 406 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1289 K02540 - - csv:101219546 1758.04
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0502 Cco-Chr9:4399185 Cco10g1289 Cco-Chr10:25808289 1.60E-88 dispersed
Cco10g1289 Cco-Chr10:25808289 Cco11g0380 Cco-Chr11:3789584 9.20E-92 dispersed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0051 . 106 692 Core DNA Replication Machinery Family AT4G14700 65.4 1.5e-220 763.1
Cco08g0051 . 20 692 Core DNA Replication Machinery Family AT4G12620 61.6 4.0e-229 791.6
Cco08g1757 . 65 436 Core DNA Replication Machinery Family AT2G37560 57.3 2.2e-123 439.1
Cco07g0493 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Cco06g0369 . 3 534 Core DNA Replication Machinery Family AT4G29910 56.9 3.3e-169 592.0
Cco11g0902 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 3.6e-92 335.1
Cco09g2466 . 68 864 Core DNA Replication Machinery Family AT1G79150 58.7 1.4e-248 856.3
Cco10g1289 . 8 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1348.6
Cco04g2230 . 102 676 Core DNA Replication Machinery Family AT5G46280 80.9 1.8e-268 921.8
Cco02g0511 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1146.3
Cco11g0380 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.1
Cco04g2395 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.9 0.0e+00 1153.7
Cco09g0502 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cco02g2101 . 55 521 Core DNA Replication Machinery Family AT2G29680 62.1 3.1e-163 572.0
Cco02g2101 . 37 482 Core DNA Replication Machinery Family AT1G07270 59.2 7.5e-143 504.2
Cco09g0862 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cco10g2049 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.2
Cco09g1753 . 44 464 Core DNA Replication Machinery Family AT2G14050 82.4 4.2e-197 684.9
Cco09g1752 . 9 237 Core DNA Replication Machinery Family AT2G14050 69.0 7.9e-87 318.5
Cco02g1292 . 1955 2365 Core DNA Replication Machinery Family AT2G20980 56.1 7.0e-118 421.0
Cco09g0260 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 2.3e-72 268.9
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 3.9e-71 264.6
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 3.9e-71 264.6
Cco05g0179 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 8.8e-50 193.7
Cco02g1335 . 1 1521 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1711.8
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco08g0215 . 144 587 Core DNA Replication Machinery Family AT5G41880 65.0 2.9e-176 615.1
Cco04g1267 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cco10g1734 . 1 441 Core DNA Replication Machinery Family AT2G42120 72.1 1.6e-192 669.1
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco01g0571 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.0 3.2e-37 151.4
Cco02g2358 . 1 1866 Core DNA Replication Machinery Family AT1G08260 74.8 0.0e+00 2799.6
Cco09g2253 . 1 1999 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2770.3
Cco09g2253 . 1 2090 Core DNA Replication Machinery Family AT2G27120 66.0 0.0e+00 2739.1
Cco02g2358 . 25 1861 Core DNA Replication Machinery Family AT2G27120 71.9 0.0e+00 2632.4
Cco01g1863 . 7 496 Core DNA Replication Machinery Family AT5G22110 63.0 4.9e-169 591.3
Cco02g2410 . 108 1032 Core DNA Replication Machinery Family AT5G22010 63.3 2.4e-307 1051.6
Cco10g0353 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.2e-173 605.1
Cco04g0633 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cco11g1646 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 3.3e-153 538.1
Cco08g0722 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 4.6e-156 547.7
Cco11g0176 . 26 607 Core DNA Replication Machinery Family AT2G06510 68.0 4.0e-245 844.3
Cco10g0112 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.1 2.4e-194 675.6
Cco06g1757 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 2.9e-248 854.7
Cco10g0112 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.5 2.8e-225 778.9
Cco06g1757 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.0e-240 828.2
Cco10g0112 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.5 1.1e-223 773.5
Cco03g1856 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.7 2.7e-189 658.3
Cco05g0323 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.4 6.2e-299 1023.8
Cco07g1648 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 2.3e-115 412.1
Cco02g2308 . 2 762 Core DNA Replication Machinery Family AT1G08130 68.8 4.8e-296 1013.8
Cco02g2308 . 162 762 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35