Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1289 | ATGGCTGGAGAAACTCCCGATGGCCACTCCTCCGGCAATCCGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGATGAAGCGGCGGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAACTTCTTGGATGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGCGATGCTCAGTTGACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCAGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACAGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCGCTTAGAGAACATGTTACCATGGATGCAGTTAGACGCTTTATAGGGAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGCGAGCTTGAGTATATGCGATTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCTGTCTTAGAAGTCATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATCGGGGGCGTAGTGACCCGGCGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAACACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTGTTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGGTAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCGGCTGTAGGACTAACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTGGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAACAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCAGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCCCAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAATGAATCTCAGGACAGTCAAGACTCTGCAAGGCCACTGGATCCGGAGGTGCTCTCCCAAGATCTGCTGAGGAAGTACATAACTTACTCTAAGTTAAATGTTTTCCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGGCAGCACGTCACACAAGAAGACGTTGATATGGCAATTCGCGTGTTACTTGATTCTTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTGCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTACCCACATCAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGATCACGAAATTTATGATCTGAAACCCTTCTTCACGAGCTCTCATTTTTCAAATGCTAATTTTGTTCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA | 2835 | 43.67 | MAGETPDGHSSGNPPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQLTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERVIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSINESQDSQDSARPLDPEVLSQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR | 944 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 25808289 | 25814164 | + | CcPI632755_10g012890.1 | Cco10g1289 | 190247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1289 | 944 | Pfam | MCM P-loop domain | 496 | 718 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | Gene3D | - | 356 | 406 | - | - | |
| Cco10g1289 | 944 | FunFam | DNA helicase | 221 | 325 | - | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Cco10g1289 | 944 | Pfam | MCM AAA-lid domain | 754 | 838 | IPR041562 | - | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 564 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 623 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 661 | 673 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 637 | 650 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 688 | 696 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 220 | 904 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| Cco10g1289 | 944 | CDD | MCM2 | 511 | 837 | - | - | |
| Cco10g1289 | 944 | SMART | mcm | 325 | 839 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | ProSiteProfiles | MCM family domain profile. | 508 | 714 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cco10g1289 | 944 | ProSitePatterns | MCM family signature. | 617 | 625 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cco10g1289 | 944 | Gene3D | - | 488 | 861 | IPR027417 | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 115 | 210 | - | - | |
| Cco10g1289 | 944 | Pfam | MCM N-terminal domain | 229 | 322 | IPR027925 | - | |
| Cco10g1289 | 944 | Gene3D | - | 221 | 325 | - | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 9 | 43 | - | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 57 | 72 | - | - | |
| Cco10g1289 | 944 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 518 | 841 | IPR027417 | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 727 | 743 | - | - | |
| Cco10g1289 | 944 | Gene3D | - | 329 | 454 | IPR012340 | - | |
| Cco10g1289 | 944 | Pfam | Mini-chromosome maintenance protein 2 | 45 | 168 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 723 | 747 | - | - | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 361 | 373 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 396 | 410 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 457 | 468 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 338 | 355 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 472 | 483 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Cco10g1289 | 944 | SUPERFAMILY | Nucleic acid-binding proteins | 230 | 477 | IPR012340 | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 115 | 159 | - | - | |
| Cco10g1289 | 944 | FunFam | DNA helicase | 488 | 861 | - | - | |
| Cco10g1289 | 944 | Pfam | MCM OB domain | 328 | 455 | IPR033762 | - | |
| Cco10g1289 | 944 | MobiDBLite | consensus disorder prediction | 176 | 191 | - | - | |
| Cco10g1289 | 944 | FunFam | DNA helicase | 356 | 406 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g0502 | Cco-Chr9:4399185 | Cco10g1289 | Cco-Chr10:25808289 | 1.60E-88 | dispersed | |
| Cco10g1289 | Cco-Chr10:25808289 | Cco11g0380 | Cco-Chr11:3789584 | 9.20E-92 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1289 | K02540 | - | csv:101219546 | 1758.04 |