Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1304 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGATCATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTTTTCACGCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCGTGGCACCTTACGATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTACAGGTACGACATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCTATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAACTCGCAAGGCCTAA 1083 43.12 MMAFSFVSAWNKRRRQKKSSQLDHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRSSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQTRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26016027 26021103 + CcPI632755_10g013040.1 Cco10g1304 190262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1304 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cco10g1304 360 Pfam Protein kinase domain 73 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1304 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Cco10g1304 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1304 360 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Cco10g1304 360 PANTHER OS01G0750732 PROTEIN 12 351 IPR050885 -
Cco10g1304 360 FunFam receptor-like serine/threonine-protein kinase NCRK 149 359 - -
Cco10g1304 360 PIRSF ILK 40 359 - -
Cco10g1304 360 CDD STKc_IRAK 76 348 - -
Cco10g1304 360 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Cco10g1304 360 FunFam serine/threonine-protein kinase PBS1-like 38 148 - -
Cco10g1304 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1304 Cco-Chr10:26016027 Cco11g1924 Cco-Chr11:31943122 5.10E-75 dispersed
Cco10g1304 Cco-Chr10:26016027 Cco10g1305 Cco-Chr10:26022845 2.40E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87158 PF00069 Pkinase 1.20E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1304 - - - 0.0