Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1304 | ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGATCATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTTTTCACGCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCGTGGCACCTTACGATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTACAGGTACGACATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCTATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAACTCGCAAGGCCTAA | 1083 | 43.12 | MMAFSFVSAWNKRRRQKKSSQLDHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRSSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQTRKA | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26016027 | 26021103 | + | CcPI632755_10g013040.1 | Cco10g1304 | 190262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1304 | 360 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1304 | 360 | Pfam | Protein kinase domain | 73 | 345 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1304 | 360 | Gene3D | Phosphorylase Kinase; domain 1 | 36 | 148 | - | - | |
Cco10g1304 | 360 | ProSiteProfiles | Protein kinase domain profile. | 70 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1304 | 360 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 353 | IPR011009 | - | |
Cco10g1304 | 360 | PANTHER | OS01G0750732 PROTEIN | 12 | 351 | IPR050885 | - | |
Cco10g1304 | 360 | FunFam | receptor-like serine/threonine-protein kinase NCRK | 149 | 359 | - | - | |
Cco10g1304 | 360 | PIRSF | ILK | 40 | 359 | - | - | |
Cco10g1304 | 360 | CDD | STKc_IRAK | 76 | 348 | - | - | |
Cco10g1304 | 360 | Gene3D | Transferase(Phosphotransferase) domain 1 | 149 | 359 | - | - | |
Cco10g1304 | 360 | FunFam | serine/threonine-protein kinase PBS1-like | 38 | 148 | - | - | |
Cco10g1304 | 360 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 195 | 207 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1304 | Cco-Chr10:26016027 | Cco11g1924 | Cco-Chr11:31943122 | 5.10E-75 | dispersed | |
Cco10g1304 | Cco-Chr10:26016027 | Cco10g1305 | Cco-Chr10:26022845 | 2.40E-64 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87158 | PF00069 | Pkinase | 1.20E-50 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1304 | - | - | - | 0.0 |