Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1305 | ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTCAACTGAGGTCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTAAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCTAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGACAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTTGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCGCTCTGACATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAATGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTGTTGTTGAATATGGATCAATACGGGGAAATCTGCCAGACGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTGGTGGGACATTATATATGGGTGACAGCATTTGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACTAACTTTTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTTCTGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCGAACGGCTTCTATCCGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATCTTTCTTGATTGGAAGAGAAGGCTTCGTATTGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACATTTAAATGCAAAGGTTGCTGATTTTGGCCTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTATGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACGAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA | 2835 | 41.34 | MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTQLRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSLGLDRLFKAKHFHFSKNQLSGTIPPELFRSDMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGNVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSVAPEWFSNLQSLTTLVVEYGSIRGNLPDGIFSLPRIQQVKLKNNAFGGTLYMGDSICQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNFCQLQQQQAKPYTTSLVNCGSKSCPSDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNRTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIFLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDEHLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ | 944 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26022845 | 26029603 | - | CcPI632755_10g013050.1 | Cco10g1305 | 190263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1305 | 944 | FunFam | Leucine-rich repeat family protein | 29 | 185 | - | - | |
Cco10g1305 | 944 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 701 | 914 | - | - | |
Cco10g1305 | 944 | Gene3D | Ribonuclease Inhibitor | 286 | 432 | IPR032675 | - | |
Cco10g1305 | 944 | CDD | STKc_IRAK | 631 | 899 | - | - | |
Cco10g1305 | 944 | Pfam | Leucine rich repeat | 291 | 350 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1305 | 944 | Gene3D | Transferase(Phosphotransferase) domain 1 | 701 | 926 | - | - | |
Cco10g1305 | 944 | Gene3D | Ribonuclease Inhibitor | 27 | 221 | IPR032675 | - | |
Cco10g1305 | 944 | FunFam | Predicted protein | 188 | 409 | - | - | |
Cco10g1305 | 944 | Pfam | Protein tyrosine and serine/threonine kinase | 627 | 895 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1305 | 944 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 43 | 897 | - | - | |
Cco10g1305 | 944 | ProSiteProfiles | Protein kinase domain profile. | 625 | 900 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1305 | 944 | SUPERFAMILY | Protein kinase-like (PK-like) | 610 | 911 | IPR011009 | - | |
Cco10g1305 | 944 | SUPERFAMILY | L domain-like | 49 | 411 | - | - | |
Cco10g1305 | 944 | FunFam | Leucine-rich repeat protein kinase family protein | 595 | 700 | - | - | |
Cco10g1305 | 944 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 745 | 757 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1305 | 944 | MobiDBLite | consensus disorder prediction | 907 | 944 | - | - | |
Cco10g1305 | 944 | Gene3D | Phosphorylase Kinase; domain 1 | 597 | 700 | - | - | |
Cco10g1305 | 944 | Pfam | Leucine Rich Repeat | 142 | 163 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1305 | 944 | Pfam | Leucine Rich Repeat | 117 | 139 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1305 | 944 | Pfam | Leucine Rich Repeat | 245 | 266 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1305 | 944 | Gene3D | Ribonuclease Inhibitor | 222 | 285 | IPR032675 | - | |
Cco10g1305 | 944 | SMART | serkin_6 | 625 | 879 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1305 | 944 | ProSitePatterns | Protein kinases ATP-binding region signature. | 631 | 653 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0002 | Cco-Chr2:34621 | Cco10g1305 | Cco-Chr10:26022845 | 5.70E-214 | dispersed | |
Cco10g1305 | Cco-Chr10:26022845 | Cco10g2277 | Cco-Chr10:35617199 | 0.00E+00 | dispersed | |
Cco10g1304 | Cco-Chr10:26016027 | Cco10g1305 | Cco-Chr10:26022845 | 2.40E-64 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87159 | PF07714 | PK_Tyr_Ser-Thr | 3.90E-45 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1305 | - | - | - | 0.0 |