Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1305 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTCAACTGAGGTCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTAAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCTAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGACAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTTGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCGCTCTGACATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAATGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTGTTGTTGAATATGGATCAATACGGGGAAATCTGCCAGACGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTGGTGGGACATTATATATGGGTGACAGCATTTGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACTAACTTTTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTTCTGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCGAACGGCTTCTATCCGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATCTTTCTTGATTGGAAGAGAAGGCTTCGTATTGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACATTTAAATGCAAAGGTTGCTGATTTTGGCCTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTATGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACGAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2835 41.34 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTQLRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSLGLDRLFKAKHFHFSKNQLSGTIPPELFRSDMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGNVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSVAPEWFSNLQSLTTLVVEYGSIRGNLPDGIFSLPRIQQVKLKNNAFGGTLYMGDSICQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNFCQLQQQQAKPYTTSLVNCGSKSCPSDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNRTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIFLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDEHLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26022845 26029603 - CcPI632755_10g013050.1 Cco10g1305 190263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1305 944 FunFam Leucine-rich repeat family protein 29 185 - -
Cco10g1305 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 914 - -
Cco10g1305 944 Gene3D Ribonuclease Inhibitor 286 432 IPR032675 -
Cco10g1305 944 CDD STKc_IRAK 631 899 - -
Cco10g1305 944 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515(InterPro)
Cco10g1305 944 Gene3D Transferase(Phosphotransferase) domain 1 701 926 - -
Cco10g1305 944 Gene3D Ribonuclease Inhibitor 27 221 IPR032675 -
Cco10g1305 944 FunFam Predicted protein 188 409 - -
Cco10g1305 944 Pfam Protein tyrosine and serine/threonine kinase 627 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1305 944 PANTHER RECEPTOR-LIKE PROTEIN 55 43 897 - -
Cco10g1305 944 ProSiteProfiles Protein kinase domain profile. 625 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1305 944 SUPERFAMILY Protein kinase-like (PK-like) 610 911 IPR011009 -
Cco10g1305 944 SUPERFAMILY L domain-like 49 411 - -
Cco10g1305 944 FunFam Leucine-rich repeat protein kinase family protein 595 700 - -
Cco10g1305 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1305 944 MobiDBLite consensus disorder prediction 907 944 - -
Cco10g1305 944 Gene3D Phosphorylase Kinase; domain 1 597 700 - -
Cco10g1305 944 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco10g1305 944 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cco10g1305 944 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cco10g1305 944 Gene3D Ribonuclease Inhibitor 222 285 IPR032675 -
Cco10g1305 944 SMART serkin_6 625 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1305 944 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0002 Cco-Chr2:34621 Cco10g1305 Cco-Chr10:26022845 5.70E-214 dispersed
Cco10g1305 Cco-Chr10:26022845 Cco10g2277 Cco-Chr10:35617199 0.00E+00 dispersed
Cco10g1304 Cco-Chr10:26016027 Cco10g1305 Cco-Chr10:26022845 2.40E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87159 PF07714 PK_Tyr_Ser-Thr 3.90E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1305 - - - 0.0