Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1328 ATGGAGTTGGTAAGCGAGAAGAGGGATTTTGATTCTTCAAACGACAACAACAAGCTCAACTCTGCTCAACCACTTCTTGATTCTTCTTATCAACCCTCACCCGCTGATGACACAAATGCCAAAGAAGCTGAAGAGTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACGTCATATGAGGACAACATAAAAAAGATCGTGGACTTCAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCTTCTTTGCCAAGCCCAACAGATCTGCATCTCTTTAAGGAAGGAATCCGTCCACTCTGGGAGGATTCTGCGAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGGCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGCGACCAACTTGATTTTGGCGATAACATATGTGGTGCCGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGCGTCTGGAACCGCAATGCATCTGATCATCAGGCGGTGATGGGTCTGCGAGATTCAATCAAAAGGCACTTAAAGCTCCCGCATGGGGTGAGAAAAAGGAGAATGTACCTCGAAGCTGAATGGTGTTTACATGCAGATGTAGATGCTGGAATAGCGGAGCAGCTAAGTTCTGTCCATTGTAATAATGGACAAACACAGCTGGCTAATGTCAGCTTCTTTTGTCTTGGACAACTCACCATGAATCTTTCAACCCCCATCCCTTCTTCACTTAACATTCCATTTCTCTCTATATCTTAA 849 44.52 MELVSEKRDFDSSNDNNKLNSAQPLLDSSYQPSPADDTNAKEAEELSERVARDLKDGLHPLKHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGVRKRRMYLEAEWCLHADVDAGIAEQLSSVHCNNGQTQLANVSFFCLGQLTMNLSTPIPSSLNIPFLSIS 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26223206 26234665 + CcPI632755_10g013280.1 Cco10g1328 190286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1328 282 Gene3D RNA Cap, Translation Initiation Factor Eif4e 31 230 IPR023398 -
Cco10g1328 282 MobiDBLite consensus disorder prediction 15 36 - -
Cco10g1328 282 Pfam Eukaryotic initiation factor 4E 60 212 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cco10g1328 282 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 35 215 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Cco10g1328 282 SUPERFAMILY eIF4e-like 35 214 IPR023398 -
Cco10g1328 282 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cco10g1328 282 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0761 Cco-Chr6:8741529 Cco10g1328 Cco-Chr10:26223206 4.20E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1328 K03259 - csv:101204290 426.787