Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1337 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTTGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGAAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGTATGTGTTGGGAATATTGGGATGAGAGAGTCGCCTCTGCTATCCTTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCCGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCTCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTCTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTTATAATCTGTGACTATTTAAAGAGTTTGGGGATAATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATATATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCCGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAGAGGCTACAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTGTGACGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2706 43.02 MNDLLSDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNVCVGNIGMRESPLLSFSFPCFSQKPKSHRPLPFLWLKGYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITKSFLNPCAHQSHIQSFWRVSPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESVTPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26334438 26353883 - CcPI632755_10g013370.1 Cco10g1337 190295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1337 901 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Cco10g1337 901 SUPERFAMILY t-snare proteins 36 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco10g1337 901 Coils Coil 36 70 - -
Cco10g1337 901 Gene3D - 36 164 - -
Cco10g1337 901 SMART tSNARE_6 201 268 IPR000727 -
Cco10g1337 901 CDD SNARE_syntaxin1-like 205 267 - -
Cco10g1337 901 MobiDBLite consensus disorder prediction 1 34 - -
Cco10g1337 901 FunFam Transcription termination factor mterf4, chloroplastic 504 641 - -
Cco10g1337 901 Pfam mTERF 540 848 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 PANTHER CGI-12 PROTEIN-RELATED 480 580 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 FunFam Syntaxin 132 199 299 - -
Cco10g1337 901 Pfam SNARE domain 242 294 IPR000727 -
Cco10g1337 901 SMART mt_12 698 730 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 735 765 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 590 621 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 802 833 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 770 801 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 626 657 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 662 693 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 518 549 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 SMART mt_12 554 585 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco10g1337 901 FunFam Syntaxin 132 31 160 - -
Cco10g1337 901 Coils Coil 209 229 - -
Cco10g1337 901 Gene3D - 198 299 - -
Cco10g1337 901 FunFam Transcription termination factor MTERF4, chloroplastic 642 856 - -
Cco10g1337 901 Gene3D Transcription termination factor 3, mitochondrial 506 643 IPR038538 -
Cco10g1337 901 Gene3D Transcription termination factor 3, mitochondrial 644 857 IPR038538 -
Cco10g1337 901 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Cco10g1337 901 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Cco10g1337 901 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco10g1337 901 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0546 Cco-Chr2:5211573 Cco10g1337 Cco-Chr10:26334438 1.10E-14 dispersed
Cco02g0919 Cco-Chr2:11073483 Cco10g1337 Cco-Chr10:26334438 6.40E-42 dispersed
Cco02g0923 Cco-Chr2:11123290 Cco10g1337 Cco-Chr10:26334438 1.30E-82 dispersed
Cco03g0056 Cco-Chr3:559939 Cco10g1337 Cco-Chr10:26334438 1.50E-08 dispersed
Cco03g0795 Cco-Chr3:8389669 Cco10g1337 Cco-Chr10:26334438 2.20E-10 dispersed
Cco04g1722 Cco-Chr4:32322285 Cco10g1337 Cco-Chr10:26334438 3.60E-32 dispersed
Cco09g2404 Cco-Chr9:38261768 Cco10g1337 Cco-Chr10:26334438 1.60E-50 dispersed
Cco10g1337 Cco-Chr10:26334438 Cco10g1812 Cco-Chr10:31699964 4.50E-64 dispersed
Cco10g1337 Cco-Chr10:26334438 Cco04g1261 Cco-Chr4:27965463 1.50E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60114 PF02536 mTERF 8.80E-105 No_clan Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1337 K15031 - csv:101203314 965.296