Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1351 | ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGGTCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTTGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGAGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTCAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACGACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA | 708 | 55.37 | MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAAASEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSEDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 26549001 | 26550639 | - | CcPI632755_10g013510.1 | Cco10g1351 | 190309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1351 | 235 | CDD | bHLH_AtAIG1_like | 61 | 136 | - | - | |
| Cco10g1351 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 69 | 127 | IPR036638 | GO:0046983(InterPro) | |
| Cco10g1351 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 69 | 115 | IPR011598 | GO:0046983(InterPro) | |
| Cco10g1351 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 44 | 232 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cco10g1351 | 235 | SMART | finulus | 71 | 120 | IPR011598 | GO:0046983(InterPro) | |
| Cco10g1351 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 65 | 114 | IPR011598 | GO:0046983(InterPro) | |
| Cco10g1351 | 235 | Gene3D | - | 61 | 125 | IPR036638 | GO:0046983(InterPro) | |
| Cco10g1351 | 235 | FunFam | transcription factor bHLH30 | 60 | 123 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0666 | Cco-Chr3:6804318 | Cco10g1351 | Cco-Chr10:26549001 | 3.10E-34 | dispersed | |
| Cco06g1118 | Cco-Chr6:17482946 | Cco10g1351 | Cco-Chr10:26549001 | 2.70E-40 | dispersed | |
| Cco10g1351 | Cco-Chr10:26549001 | Cco11g0621 | Cco-Chr11:6672800 | 2.20E-26 | dispersed | |
| Cco10g1351 | Cco-Chr10:26549001 | Cco08g1325 | Cco-Chr8:25133399 | 2.00E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60117 | PF00010 | HLH | 3.60E-12 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1351 | - | - | - | 0.0 |