Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1370 ATGAAAACAAGAGGAAGAGATTTTCATGGAGGGAACATTTCAGAGATAAAGACTGCCATTTTGTACTTCAGAGACTCGGAAATAAACTACAAGGAACTCGCAAAGTTGCTTCACTTTTCTCTCTGTGCTTGCATTGTTGGTTTTGATATTGCTTTGATTGTGAATCAAGGTTCACTGCTTGAGTTTCGGGTCAGCCATCAACAGATCTGGCCTGAGAGTGTGTTTGAGCCGGAGCTGTTGATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCAAGGAATCTCGATTCATCTCGCCAGCCATCTCCTAAACAGTCTAGGAATGAAGCAACTTCTTCGGCGTCCTACCTTTGGTCTCAAAATTGTGCCAAGAAACCCCTTCGCCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCAATTTGAACGTGCAGCTTGAAGGTTTAACTGATGTGAAAAATCATACACACGTTTCTAATAAGGGGAAATCCGAGCTAGTAAACCCAACAGATAGTTCACATAAATCAACTGAAAGTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGAAGCAGAACCTCTTGTGAAGCATATTATCGATGATTCTAAGGATTGTTGTTCAAGTGGCTCAGAAGAATCTGGAAATCAAGTATTGAACGCATCGAAAGTAGCTGCCACACAAATAATTGATCAACTAAAGTCTCAGCCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGTGAAAGCATCGACATCACAAATTCCCTTGATCTTGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAAAGCAATTCGAGTAGTTTAAGCAATGCCATGTATAAACCTCATAAAGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGGTTGCTGCGAAGACTGGGATGTGGTGATATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACTGAACGCGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACACTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCCGGGGGCGACTTGCATGCGCTTAGGCAGAGACAGCCTGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTCTCCCCAACACTTGTTAAATCATCAAACTCGGGGTTAGAAGCTAAAAGCTCGGGTTACTGTGCTCAGCCTGCCTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACACCTCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAGTCCAAACCGAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAACCCACAAGTGCAAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGCAGTGCCGTGGATTGGTGGACTTTTGGGATCTTTCTTTACGAGCTTTTGTTTGGCCGAACTCCGTTCAAGGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCCGAGGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGGATGGAGACACCACACGCACCGGCCGGAGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2256 44.28 MKTRGRDFHGGNISEIKTAILYFRDSEINYKELAKLLHFSLCACIVGFDIALIVNQGSLLEFRVSHQQIWPESVFEPELLMEPLVDGMSSLLKTQNPTSTSRNLDSSRQPSPKQSRNEATSSASYLWSQNCAKKPLRHPNGSSVSSKKHPTNLNVQLEGLTDVKNHTHVSNKGKSELVNPTDSSHKSTESSFQKKVPLEGGEAEPLVKHIIDDSKDCCSSGSEESGNQVLNASKVAATQIIDQLKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESIDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHAPAGEKMPGVDVKPSGNYLEIDFF 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26715631 26720423 - CcPI632755_10g013700.1 Cco10g1370 190328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1370 751 FunFam Serine/threonine-protein kinase D6PK-like 357 442 - -
Cco10g1370 751 MobiDBLite consensus disorder prediction 159 199 - -
Cco10g1370 751 Gene3D Phosphorylase Kinase; domain 1 357 442 - -
Cco10g1370 751 SUPERFAMILY Protein kinase-like (PK-like) 334 721 IPR011009 -
Cco10g1370 751 PANTHER FLIPPASE KINASE 1-RELATED 202 715 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco10g1370 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1370 751 Pfam Protein kinase domain 592 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1370 751 Pfam Protein kinase domain 360 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1370 751 MobiDBLite consensus disorder prediction 91 123 - -
Cco10g1370 751 FunFam serine/threonine-protein kinase D6PK-like 590 713 - -
Cco10g1370 751 CDD STKc_phototropin_like 358 718 - -
Cco10g1370 751 SMART serkin_6 359 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1370 751 FunFam serine/threonine-protein kinase D6PK-like 443 510 - -
Cco10g1370 751 Gene3D Transferase(Phosphotransferase) domain 1 443 511 - -
Cco10g1370 751 Gene3D Transferase(Phosphotransferase) domain 1 590 713 - -
Cco10g1370 751 ProSiteProfiles Protein kinase domain profile. 359 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1370 751 MobiDBLite consensus disorder prediction 172 194 - -
Cco10g1370 751 MobiDBLite consensus disorder prediction 307 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1154 Cco-Chr2:19883135 Cco10g1370 Cco-Chr10:26715631 3.50E-99 dispersed
Cco04g0191 Cco-Chr4:4495443 Cco10g1370 Cco-Chr10:26715631 1.60E-147 dispersed
Cco04g1902 Cco-Chr4:33532347 Cco10g1370 Cco-Chr10:26715631 6.00E-185 dispersed
Cco05g0014 Cco-Chr5:133185 Cco10g1370 Cco-Chr10:26715631 9.40E-182 dispersed
Cco09g0775 Cco-Chr9:7115546 Cco10g1370 Cco-Chr10:26715631 5.80E-39 dispersed
Cco09g0841 Cco-Chr9:7910846 Cco10g1370 Cco-Chr10:26715631 1.60E-54 dispersed
Cco10g1370 Cco-Chr10:26715631 Cco11g0307 Cco-Chr11:3089334 1.20E-113 dispersed
Cco10g1370 Cco-Chr10:26715631 Cco01g1229 Cco-Chr1:18768052 8.90E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87162 PF00069 Pkinase 9.50E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1370 K08286 - csv:101219962 1281.16