Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1377 ATGAGAATCCACGCCCCGTCACCGTCAAGAAACGAAGATCATGCTTACGACGTCGTTTTGCGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCGGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGGTATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAACTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGAGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1632 43.2 MRIHAPSPSRNEDHAYDVVLRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRVFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHENSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26816257 26822609 - CcPI632755_10g013770.1 Cco10g1377 190335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1377 543 SMART serkin_6 108 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 CDD PKc_MAPKK_plant_like 109 368 - -
Cco10g1377 543 Gene3D - 391 541 - -
Cco10g1377 543 ProSiteProfiles Protein kinase domain profile. 108 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 SUPERFAMILY Protein kinase-like (PK-like) 111 395 IPR011009 -
Cco10g1377 543 FunFam mitogen-activated protein kinase kinase 3 81 189 - -
Cco10g1377 543 SUPERFAMILY NTF2-like 389 541 IPR032710 -
Cco10g1377 543 FunFam Mitogen-activated protein kinase kinase 3 388 542 - -
Cco10g1377 543 Pfam Protein kinase domain 111 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 Gene3D Phosphorylase Kinase; domain 1 84 189 - -
Cco10g1377 543 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 85 397 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco10g1377 543 FunFam mitogen-activated protein kinase kinase 3 190 386 - -
Cco10g1377 543 ProSiteProfiles Nuclear transport factor 2 domain profile. 391 541 IPR018222 -
Cco10g1377 543 Gene3D Transferase(Phosphotransferase) domain 1 190 390 - -
Cco10g1377 543 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1377 Cco-Chr10:26816257 Cco11g0187 Cco-Chr11:1842301 3.20E-57 dispersed
Cco10g1377 Cco-Chr10:26816257 Cco11g0228 Cco-Chr11:2210164 2.90E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87163 PF00069 Pkinase 1.30E-59 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1377 K20607 - csv:101217978 1011.13