Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1377 ATGAGAATCCACGCCCCGTCACCGTCAAGAAACGAAGATCATGCTTACGACGTCGTTTTGCGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCGGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGGTATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAACTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGAGTGTCAGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1632 43.2 MRIHAPSPSRNEDHAYDVVLRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRVFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGPDEFWHHTKALYHENSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26816257 26822609 - CcPI632755_10g013770.1 Cco10g1377 190335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1377 543 SMART serkin_6 108 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 CDD PKc_MAPKK_plant_like 109 368 - -
Cco10g1377 543 Gene3D - 391 541 - -
Cco10g1377 543 ProSiteProfiles Protein kinase domain profile. 108 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 SUPERFAMILY Protein kinase-like (PK-like) 111 395 IPR011009 -
Cco10g1377 543 FunFam mitogen-activated protein kinase kinase 3 81 189 - -
Cco10g1377 543 SUPERFAMILY NTF2-like 389 541 IPR032710 -
Cco10g1377 543 FunFam Mitogen-activated protein kinase kinase 3 388 542 - -
Cco10g1377 543 Pfam Protein kinase domain 111 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1377 543 Gene3D Phosphorylase Kinase; domain 1 84 189 - -
Cco10g1377 543 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 85 397 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco10g1377 543 FunFam mitogen-activated protein kinase kinase 3 190 386 - -
Cco10g1377 543 ProSiteProfiles Nuclear transport factor 2 domain profile. 391 541 IPR018222 -
Cco10g1377 543 Gene3D Transferase(Phosphotransferase) domain 1 190 390 - -
Cco10g1377 543 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1377 K20607 - - csv:101217978 1011.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1377 Cco-Chr10:26816257 Cco11g0187 Cco-Chr11:1842301 3.20E-57 dispersed
Cco10g1377 Cco-Chr10:26816257 Cco11g0228 Cco-Chr11:2210164 2.90E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1588 . 104 409 MAP Kinase Kinase Gene Family AT4G26070 71.6 9.9e-129 456.8
Cco11g0187 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 9.3e-119 423.7
Cco11g0228 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.0 3.3e-108 388.7
Cco03g1588 . 77 402 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.3e-133 472.2
Cco11g0187 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.0e-117 418.7
Cco11g0228 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cco10g1377 . 61 543 MAP Kinase Kinase Gene Family AT5G40440 79.5 2.1e-228 788.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cco01g1633 . 39 311 MAP Kinase Kinase Gene Family AT3G21220 54.2 1.2e-84 310.5
Cco11g0228 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.3 7.1e-170 593.6
Cco03g1588 . 83 408 MAP Kinase Kinase Gene Family AT5G56580 61.5 7.7e-116 414.1
Cco11g0187 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.2e-104 374.8
Cco01g1633 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.6e-109 392.9
Cco01g1633 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.1 1.3e-81 300.1
Cco01g1633 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.6e-114 409.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87163 PF00069 Pkinase 1.30E-59 CL0016 Cco PK