Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1378 ATGGTAAGAAAGACGGCTCTGACAGACCAAAAAAAGCCTAAAATTCATCAAAGGAAGATGTCTTCTTCCACCTACCCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCGCCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAACGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCAAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 591 50.76 MVRKTALTDQKKPKIHQRKMSSSTYPNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYAQRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26834204 26835144 + CcPI632755_10g013780.1 Cco10g1378 190336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1378 196 MobiDBLite consensus disorder prediction 176 196 - -
Cco10g1378 196 Coils Coil 108 128 - -
Cco10g1378 196 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
Cco10g1378 196 MobiDBLite consensus disorder prediction 138 164 - -
Cco10g1378 196 MobiDBLite consensus disorder prediction 1 16 - -
Cco10g1378 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 28 154 - -
Cco10g1378 196 MobiDBLite consensus disorder prediction 1 23 - -
Cco10g1378 196 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2276 Cco-Chr4:36324430 Cco10g1378 Cco-Chr10:26834204 2.90E-30 dispersed
Cco07g0518 Cco-Chr7:6404829 Cco10g1378 Cco-Chr10:26834204 3.60E-32 dispersed
Cco09g2460 Cco-Chr9:38769630 Cco10g1378 Cco-Chr10:26834204 1.30E-35 dispersed
Cco10g1378 Cco-Chr10:26834204 Cco11g0593 Cco-Chr11:6343251 2.20E-32 dispersed
Cco11g0618 Cco-Chr11:6640944 Cco10g1378 Cco-Chr10:26834204 1.50E-37 transposed
Cco11g1139 Cco-Chr11:22185943 Cco10g1378 Cco-Chr10:26834204 6.70E-46 transposed
Cco02g1441 Cco-Chr2:26802056 Cco10g1378 Cco-Chr10:26834204 5.20E-39 transposed
Cco09g0063 Cco-Chr9:551810 Cco10g1378 Cco-Chr10:26834204 1.00E-22 transposed
Cco01g1487 Cco-Chr1:26631782 Cco10g1378 Cco-Chr10:26834204 4.20E-49 wgd
Cco10g1378 Cco-Chr10:26834204 Cco06g1928 Cco-Chr6:29543816 2.90E-56 wgd
Cco10g1378 Cco-Chr10:26834204 Cco09g2134 Cco-Chr9:35716222 5.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60118 PF03195 LOB 3.20E-42 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1378 - - - 0.0