Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1378 | ATGGTAAGAAAGACGGCTCTGACAGACCAAAAAAAGCCTAAAATTCATCAAAGGAAGATGTCTTCTTCCACCTACCCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCGCCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAACGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCAAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA | 591 | 50.76 | MVRKTALTDQKKPKIHQRKMSSSTYPNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYAQRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26834204 | 26835144 | + | CcPI632755_10g013780.1 | Cco10g1378 | 190336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1378 | 196 | MobiDBLite | consensus disorder prediction | 176 | 196 | - | - | |
Cco10g1378 | 196 | Coils | Coil | 108 | 128 | - | - | |
Cco10g1378 | 196 | ProSiteProfiles | LOB domain profile. | 28 | 129 | IPR004883 | - | |
Cco10g1378 | 196 | MobiDBLite | consensus disorder prediction | 138 | 164 | - | - | |
Cco10g1378 | 196 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cco10g1378 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 28 | 154 | - | - | |
Cco10g1378 | 196 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco10g1378 | 196 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 126 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2276 | Cco-Chr4:36324430 | Cco10g1378 | Cco-Chr10:26834204 | 2.90E-30 | dispersed | |
Cco07g0518 | Cco-Chr7:6404829 | Cco10g1378 | Cco-Chr10:26834204 | 3.60E-32 | dispersed | |
Cco09g2460 | Cco-Chr9:38769630 | Cco10g1378 | Cco-Chr10:26834204 | 1.30E-35 | dispersed | |
Cco10g1378 | Cco-Chr10:26834204 | Cco11g0593 | Cco-Chr11:6343251 | 2.20E-32 | dispersed | |
Cco11g0618 | Cco-Chr11:6640944 | Cco10g1378 | Cco-Chr10:26834204 | 1.50E-37 | transposed | |
Cco11g1139 | Cco-Chr11:22185943 | Cco10g1378 | Cco-Chr10:26834204 | 6.70E-46 | transposed | |
Cco02g1441 | Cco-Chr2:26802056 | Cco10g1378 | Cco-Chr10:26834204 | 5.20E-39 | transposed | |
Cco09g0063 | Cco-Chr9:551810 | Cco10g1378 | Cco-Chr10:26834204 | 1.00E-22 | transposed | |
Cco01g1487 | Cco-Chr1:26631782 | Cco10g1378 | Cco-Chr10:26834204 | 4.20E-49 | wgd | |
Cco10g1378 | Cco-Chr10:26834204 | Cco06g1928 | Cco-Chr6:29543816 | 2.90E-56 | wgd | |
Cco10g1378 | Cco-Chr10:26834204 | Cco09g2134 | Cco-Chr9:35716222 | 5.20E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60118 | PF03195 | LOB | 3.20E-42 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1378 | - | - | - | 0.0 |