Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1386 ATGGCTTCCATTTTCATCCATTCCTCAAACCAATTTCCAATCCATGGAGTTCCCTTCTTCTTCTTCTTCCTTTTCTTCTCTGTTTCTCTCTCAGATCCCCGAATCTCGGAATCCGGTAGCTTCTGTGGAAAATTCAAGCCTCCACCCACATCCGGATTCATACCAACCTTCGTCGAAGAAATGGAAGCCATTTCCGAGCTTCTCACAACTCGCAGTTGGACCACTCACTTCGTCAATTCCACTCCCCCAATGTTCGCTTTATCCCAATGCTTCAAAGATCTCTCTCACACTGATTGCCTTCTCTGCTACGCCGCCAGCCGCACCGCCCTTCCCCGCTGCCTCCCTGCCGTCTCCGCCCGGATTTTCCTCGACGGATGCTTCCTCCGGTATGACAATTACAGCTTCTATAAAGAATCCACTGATTCGCTTAGGGATTCTGTGAATTGCACCTCGGAATTGGGGGAAATCGATGAATCTGAGAGGCTAGGGTTTGGGAAGAATGTTAGGCTTATTGTTGAGACTGTGACGAGGACGGCCATGGAGAATGGCGGATTTGGGATTGGGGAAGTTAATGGGATGTTTGGTTTGGCGCAGTGTTGGGGGAGTGTTGAGCCTGAGGGATGCAGAGCTTGCTTGGAGAAGGCGAAGAGGAGTATCAGTAGCTGTTTGCCGAGTAGAGAAGGGAGAGCTATGAATGCTGGGTGTTATTTGAGATATTCGACTGTGAAATTCTATAACGATAAGGATGAAGATCGGGATCCTGATGGAATTTCTGGAAGAAGAGCAGTAGTTACCATTGCCTTAGCTTCAGCTGCCTCCTTGATCATCTTCCTTTCAGCTGTGTTTGCATGCTATACAAGAATAACAAAGTTCAAGAAAGAAAAGAAAAAGCAATCACTTATTCCAACTTCCTTCAAGGATTCCAATTTGAATTACAAATATGAAGCACTTGAAAAGGCAACTAATTACTTCAACCCATCAAGTAAGATAGGCCAAGGTGGAGCTGGTTCTGTATATAAAGGAACTCTTCCAAATGGGCAGGTTGTTGCTGTGAAGAGATTGGTTTTCCATACCAGGCAATGGGTTGATGAGTTCTTCAATGAGGTGAATTTAATCCGCGGAATCCAACACAAAAACCTTGTTGCCCTTTTAGGTTGCAGCATTGAAGGGCCTGAAAGTCTGCTGGTCTATGAGTATGTTCCGAACCGGAGCCTTGATCAGTTCATTTTCGATAAGAACAAGGTTCAGATTCTAAATTGGAAACAACGTTTCAATATTATTGTGGGAACAGCTGAAGGGCTTGCACATCTTCATGAAGGTTGTAAAATAAGAATAATCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAAAATTTCAATCCGAAGATTGCGGATTTTGGCCTCGCTCGGCATTTTGCAGCTGATCAGTCTCATCTTAGCACAGGAATTGCCGGGACACTGGGTTACATGGCTCCTGAATATCTCGTTCGAGGACAACTCACAGAAAAGGCTGATGTTTATAGTTTTGGAGTGTTGATACTCGAGATCGTTTGTGGTAGAAGAAACAGCTCCTTCACTGAGAATTCTACCCCACTCCTCCAAACAGTTTGGGATCTGTACAAATCAGAGAGATTAACTGAAGCCATTGACACAAGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATGTTCTGCAAATAGCGCTTTTATGCACACAAGCTCTAGCTTCGTTGAGACCATCAATGGCAACAATCGTGAAACTGCTAACCAGTGATGTAGAAAGGAAGGTTGCCATCCCTGAACAACCTCCATTTTTGAATCCTTGTGGACCTTCAAGAAGGTCTTGCAGAATTAGCAGCTTGGCATCTCATGCAGTTTCCAAACTTGAAGTTTCTTCTTACACATCAACAGATTCAGGTTCTTCTTCTAACTTGCCTTCAAGAAGTGAAGATTTTGCTGAATTGAGTTCAAACTGA 1986 44.26 MASIFIHSSNQFPIHGVPFFFFFLFFSVSLSDPRISESGSFCGKFKPPPTSGFIPTFVEEMEAISELLTTRSWTTHFVNSTPPMFALSQCFKDLSHTDCLLCYAASRTALPRCLPAVSARIFLDGCFLRYDNYSFYKESTDSLRDSVNCTSELGEIDESERLGFGKNVRLIVETVTRTAMENGGFGIGEVNGMFGLAQCWGSVEPEGCRACLEKAKRSISSCLPSREGRAMNAGCYLRYSTVKFYNDKDEDRDPDGISGRRAVVTIALASAASLIIFLSAVFACYTRITKFKKEKKKQSLIPTSFKDSNLNYKYEALEKATNYFNPSSKIGQGGAGSVYKGTLPNGQVVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEYVPNRSLDQFIFDKNKVQILNWKQRFNIIVGTAEGLAHLHEGCKIRIIHRDIKSSNVLLDENFNPKIADFGLARHFAADQSHLSTGIAGTLGYMAPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTPLLQTVWDLYKSERLTEAIDTSLNKDYPAKEAMDVLQIALLCTQALASLRPSMATIVKLLTSDVERKVAIPEQPPFLNPCGPSRRSCRISSLASHAVSKLEVSSYTSTDSGSSSNLPSRSEDFAELSSN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26924363 26927452 - CcPI632755_10g013860.1 Cco10g1386 190344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1386 661 MobiDBLite consensus disorder prediction 635 661 - -
Cco10g1386 661 FunFam Cysteine-rich receptor-like protein kinase 2 400 600 - -
Cco10g1386 661 Gene3D - 154 244 IPR038408 -
Cco10g1386 661 Gene3D - 56 135 IPR038408 -
Cco10g1386 661 CDD STKc_IRAK 330 593 - -
Cco10g1386 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1386 661 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 173 631 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco10g1386 661 Gene3D Transferase(Phosphotransferase) domain 1 400 603 - -
Cco10g1386 661 FunFam Cysteine-rich receptor-like protein kinase 3 146 244 - -
Cco10g1386 661 SMART serkin_6 324 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1386 661 Pfam Protein kinase domain 326 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1386 661 ProSiteProfiles Protein kinase domain profile. 324 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1386 661 ProSiteProfiles Gnk2-homologous domain profile. 35 135 IPR002902 -
Cco10g1386 661 Pfam Salt stress response/antifungal 159 241 IPR002902 -
Cco10g1386 661 Pfam Salt stress response/antifungal 74 133 IPR002902 -
Cco10g1386 661 SUPERFAMILY Protein kinase-like (PK-like) 300 592 IPR011009 -
Cco10g1386 661 ProSiteProfiles Gnk2-homologous domain profile. 144 244 IPR002902 -
Cco10g1386 661 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Cco10g1386 661 FunFam Cysteine-rich receptor-like protein kinase 42 61 135 - -
Cco10g1386 661 FunFam Cysteine-rich receptor-like protein kinase 2 291 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1955 Cco-Chr8:30375461 Cco10g1386 Cco-Chr10:26924363 1.90E-130 dispersed
Cco10g1386 Cco-Chr10:26924363 Cco10g2184 Cco-Chr10:34958252 3.00E-73 dispersed
Cco10g1386 Cco-Chr10:26924363 Cco05g2819 Cco-Chr5:35875949 1.10E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87164 PF00069 Pkinase 4.30E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1386 - - - 0.0