Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1398 | ATGTTTCTTGTTATTCGATCCTGCAGTAGGGTCTTAACGGAAAGGAGAATACGTGTGCAACGGAAGACTATGGCAATAACAGCCCCAGGACAGCTCAATGTTAATGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATTACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGGCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGGAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGTTTACCGAAGTATGAAGCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCACTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTACTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAATATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCCCGAGGTGGGGCTGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA | 1620 | 46.42 | MFLVIRSCSRVLTERRIRVQRKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPTSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27029324 | 27036377 | - | CcPI632755_10g013980.1 | Cco10g1398 | 190356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1398 | 539 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 144 | - | - | |
Cco10g1398 | 539 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 77 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1398 | 539 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 182 | 194 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1398 | 539 | MobiDBLite | consensus disorder prediction | 360 | 389 | - | - | |
Cco10g1398 | 539 | CDD | STKc_CDK9_like | 48 | 347 | - | - | |
Cco10g1398 | 539 | MobiDBLite | consensus disorder prediction | 358 | 539 | - | - | |
Cco10g1398 | 539 | MobiDBLite | consensus disorder prediction | 510 | 539 | - | - | |
Cco10g1398 | 539 | FunFam | Cyclin-dependent kinase C-2 | 145 | 387 | - | - | |
Cco10g1398 | 539 | PANTHER | CELL DIVISION PROTEIN KINASE | 48 | 347 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco10g1398 | 539 | SUPERFAMILY | Protein kinase-like (PK-like) | 42 | 355 | IPR011009 | - | |
Cco10g1398 | 539 | Gene3D | Transferase(Phosphotransferase) domain 1 | 145 | 387 | - | - | |
Cco10g1398 | 539 | FunFam | Cyclin-dependent kinase C-2 | 35 | 144 | - | - | |
Cco10g1398 | 539 | SMART | serkin_6 | 48 | 347 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1398 | 539 | MobiDBLite | consensus disorder prediction | 450 | 482 | - | - | |
Cco10g1398 | 539 | MobiDBLite | consensus disorder prediction | 396 | 410 | - | - | |
Cco10g1398 | 539 | ProSiteProfiles | Protein kinase domain profile. | 48 | 347 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1398 | 539 | Pfam | Protein kinase domain | 48 | 347 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2568 | Cco-Chr2:37980105 | Cco10g1398 | Cco-Chr10:27029324 | 4.10E-273 | dispersed | |
Cco10g1398 | Cco-Chr10:27029324 | Cco11g0075 | Cco-Chr11:781104 | 7.80E-96 | dispersed | |
Cco10g1392 | Cco-Chr10:26983837 | Cco10g1398 | Cco-Chr10:27029324 | 6.00E-32 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87166 | PF00069 | Pkinase | 1.30E-74 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1398 | K08819 | - | csv:101215918 | 985.326 |