Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1406 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGTGCTTTGGAAATGGAAGTATTAGGGATGGTCCGAGAGTAAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTCGAAAGACCCTTTTCACCCTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGTAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTGACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTTCATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAAAAGGATGCAAATATCGTGAAGGTAATCGAAAGGCCATTGACAGAAAACGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAACACTGGCGAATATCTCCGCCATGGACCACGGTGGCTTCACCTTCATTTCGTCGCTATCTGGCCGGAGAACGCCATCCTCCGCCGAAATTCTCTGTCTATGTGAAAATATCCTCATAGCCGGTGCCGGAATTGCCGAATCTCAGAGGGGATTTGGAGTTTTTCCGATCGGTTGCCGCCAGGCCCAATTTATGTGGAGTTAA 1947 44.02 MAVLQLPCVRITDCSSSPLLRGSKSSLFWGSNLCFGNGSIRDGPRVKASFNGRVVKVFAMSDSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVVALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFDILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKFITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSTLANISAMDHGGFTFISSLSGRRTPSSAEILCLCENILIAGAGIAESQRGFGVFPIGCRQAQFMWS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27146276 27153702 + CcPI632755_10g014060.1 Cco10g1406 190364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1406 648 Gene3D Immunoglobulins 445 541 IPR013783 -
Cco10g1406 648 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 426 IPR029021 -
Cco10g1406 648 SUPERFAMILY PDZ domain-like 61 163 IPR036034 GO:0005515(InterPro)
Cco10g1406 648 Gene3D Protein tyrosine phosphatase superfamily 284 549 IPR029021 -
Cco10g1406 648 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 445 541 - -
Cco10g1406 648 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
Cco10g1406 648 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 59 583 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cco10g1406 648 SUPERFAMILY E set domains 455 538 IPR014756 -
Cco10g1406 648 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
Cco10g1406 648 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203(InterPro)
Cco10g1406 648 CDD E_set_AMPKbeta_like_N 458 537 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1406 - - - 0.0