Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1412 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGCTTAGACGAGCAGTTACAGAGACATTTGACCAAAGCATGGACCATGGAGAAGAACAAGAAGAGGGAAGATGAGGAAGGCGTCGGCGTCGGCGGTGGTGGAGGAGGAGGCGTCGGCGGAGGAAGGCCGGCTATCACTAGGCAGGAGTGGGAGATTGACCCTTCTAAACTAATCATCAAAGCGGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGGGAAGAGGGGCATAGGTCGGAGGCAGAAATCGCGTCGCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAGGCCTCAAATCCCAATGATATGACTGGCGAGACTGGAACACTTGGGTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTCTATGGGAAATATACTGCTGCGATATGCCATATCCCGACCTTAGCTTCTCAGAAGTGACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATTGACACATCGAAGGGTGGAGGTATGATCCCCCTCGATCAGTCGCAAGGCTGTTTTTGCTTCCGCAGGTACCGGGGGCCTTGA 1143 47.24 MKEKSESGGGYVRADQIDLKSLDEQLQRHLTKAWTMEKNKKREDEEGVGVGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27205296 27208733 + CcPI632755_10g014120.1 Cco10g1412 190370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1412 380 FunFam Kinase suppressor of Ras 1 66 161 - -
Cco10g1412 380 PRINTS Tyrosine kinase catalytic domain signature 212 230 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 PRINTS Tyrosine kinase catalytic domain signature 322 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 PRINTS Tyrosine kinase catalytic domain signature 174 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 SMART serkin_6 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 352 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cco10g1412 380 MobiDBLite consensus disorder prediction 33 48 - -
Cco10g1412 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 Gene3D Transferase(Phosphotransferase) domain 1 177 367 - -
Cco10g1412 380 FunFam Serine/threonine-protein kinase HT1 177 362 - -
Cco10g1412 380 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Cco10g1412 380 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1412 380 CDD STKc_MAP3K-like 83 351 - -
Cco10g1412 380 MobiDBLite consensus disorder prediction 33 64 - -
Cco10g1412 380 Gene3D Phosphorylase Kinase; domain 1 64 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0580 Cco-Chr5:4749219 Cco10g1412 Cco-Chr10:27205296 5.80E-138 dispersed
Cco09g0698 Cco-Chr9:6247296 Cco10g1412 Cco-Chr10:27205296 5.50E-147 dispersed
Cco10g1412 Cco-Chr10:27205296 Cco11g1147 Cco-Chr11:22402226 3.70E-60 dispersed
Cco01g1456 Cco-Chr1:26321588 Cco10g1412 Cco-Chr10:27205296 7.30E-55 wgd
Cco10g1412 Cco-Chr10:27205296 Cco06g1895 Cco-Chr6:29138663 6.50E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87167 PF07714 PK_Tyr_Ser-Thr 2.20E-64 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1412 - - - 0.0