Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1420 ATGGAATCTAGTCGGTTCTTGTTTAATCCGCCACCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTATGACGAATTCTACCCTGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCCTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTCAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATGTGTAACATCAGAGGTTCTTCTAGCAGAAATTGCCCATGTCTCCACCCCACACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATTGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATCGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 843 47.21 MESSRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLQSEVASLTEKCQAQGLNGGEAPIPCVTSEVLLAEIAHVSTPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27286663 27290968 + CcPI632755_10g014200.1 Cco10g1420 190378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1420 280 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco10g1420 280 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1420 280 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Cco10g1420 280 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
Cco10g1420 280 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Cco10g1420 280 Gene3D - 67 130 - -
Cco10g1420 280 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Cco10g1420 280 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Cco10g1420 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 245 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco10g1420 280 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Cco10g1420 280 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Cco10g1420 280 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Cco10g1420 280 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1575 Cco-Chr1:28463235 Cco10g1420 Cco-Chr10:27286663 2.30E-29 dispersed
Cco04g1177 Cco-Chr4:27178731 Cco10g1420 Cco-Chr10:27286663 1.60E-20 dispersed
Cco05g2730 Cco-Chr5:35195052 Cco10g1420 Cco-Chr10:27286663 2.30E-21 dispersed
Cco10g1420 Cco-Chr10:27286663 Cco11g1480 Cco-Chr11:27610251 1.10E-24 dispersed
Cco10g1420 Cco-Chr10:27286663 Cco09g2096 Cco-Chr9:35347919 2.50E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60120 PF00046 Homeodomain 4.40E-18 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1420 K09338 - csv:101212142 474.552