Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1420 | ATGGAATCTAGTCGGTTCTTGTTTAATCCGCCACCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTATGACGAATTCTACCCTGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCCTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTCAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATGTGTAACATCAGAGGTTCTTCTAGCAGAAATTGCCCATGTCTCCACCCCACACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATTGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATCGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG | 843 | 47.21 | MESSRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLQSEVASLTEKCQAQGLNGGEAPIPCVTSEVLLAEIAHVSTPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27286663 | 27290968 | + | CcPI632755_10g014200.1 | Cco10g1420 | 190378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1420 | 280 | ProSitePatterns | 'Homeobox' domain signature. | 99 | 122 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco10g1420 | 280 | Pfam | Homeobox associated leucine zipper | 124 | 165 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g1420 | 280 | ProSiteProfiles | 'Homeobox' domain profile. | 64 | 124 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | Pfam | Homeodomain | 69 | 122 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | SMART | HOX_1 | 67 | 128 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | Gene3D | - | 67 | 130 | - | - | |
Cco10g1420 | 280 | FunFam | Homeobox-leucine zipper protein HAT5 | 62 | 126 | - | - | |
Cco10g1420 | 280 | SUPERFAMILY | Homeodomain-like | 63 | 126 | IPR009057 | - | |
Cco10g1420 | 280 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 44 | 245 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Cco10g1420 | 280 | CDD | homeodomain | 69 | 125 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | PRINTS | Lambda-repressor HTH signature | 95 | 104 | IPR000047 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | PRINTS | Lambda-repressor HTH signature | 104 | 120 | IPR000047 | GO:0003677(InterPro) | |
Cco10g1420 | 280 | Coils | Coil | 144 | 164 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1575 | Cco-Chr1:28463235 | Cco10g1420 | Cco-Chr10:27286663 | 2.30E-29 | dispersed | |
Cco04g1177 | Cco-Chr4:27178731 | Cco10g1420 | Cco-Chr10:27286663 | 1.60E-20 | dispersed | |
Cco05g2730 | Cco-Chr5:35195052 | Cco10g1420 | Cco-Chr10:27286663 | 2.30E-21 | dispersed | |
Cco10g1420 | Cco-Chr10:27286663 | Cco11g1480 | Cco-Chr11:27610251 | 1.10E-24 | dispersed | |
Cco10g1420 | Cco-Chr10:27286663 | Cco09g2096 | Cco-Chr9:35347919 | 2.50E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60120 | PF00046 | Homeodomain | 4.40E-18 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1420 | K09338 | - | csv:101212142 | 474.552 |