Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1423 ATGGAAGCCCATAAATTGGAGCTACGAAGCTCTGTTCCTCCACTTCAGATAGAAAACCGCCATGGCCAAGTATCAATGTTCTTGGCTATTACACATCCACCTGGCCCCTCCCCCATTTCACTTGCACCAACCCCAATTATATCTCCATTCCCTCCTAAACTTCTCATTTCTTTCTTCTTCTTCCTCTCTCCATCAACCTTCAATCTCTCTGTCTCTCTCACACACACACAATTCTCGCCGGGGAACACGACAAAACCCCGGAATCCGCCATGGAAGATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTCGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCAATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAATGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCGCTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAGTTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2409 44.83 MEAHKLELRSSVPPLQIENRHGQVSMFLAITHPPGPSPISLAPTPIISPFPPKLLISFFFFLSPSTFNLSVSLTHTQFSPGNTTKPRNPPWKMDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLNDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27327317 27331406 - CcPI632755_10g014230.1 Cco10g1423 190381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1423 802 ProSiteProfiles cAMP/cGMP binding motif profile. 548 678 IPR000595 -
Cco10g1423 802 SUPERFAMILY Voltage-gated potassium channels 141 470 - -
Cco10g1423 802 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 134 780 - -
Cco10g1423 802 CDD CAP_ED 548 679 IPR000595 -
Cco10g1423 802 Gene3D Helix hairpin bin 475 539 - -
Cco10g1423 802 Gene3D - 153 473 - -
Cco10g1423 802 Pfam Cyclic nucleotide-binding domain 571 658 IPR000595 -
Cco10g1423 802 Gene3D Jelly Rolls 546 666 IPR014710 -
Cco10g1423 802 SUPERFAMILY cAMP-binding domain-like 478 673 IPR018490 -
Cco10g1423 802 Pfam Ion transport protein 150 475 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1423 802 MobiDBLite consensus disorder prediction 770 785 - -
Cco10g1423 802 MobiDBLite consensus disorder prediction 770 802 - -
Cco10g1423 802 SMART cnmp_10 548 679 IPR000595 -
Cco10g1423 802 MobiDBLite consensus disorder prediction 788 802 - -
Cco10g1423 802 FunFam Cyclic nucleotide-gated ion channel 1 475 539 - -
Cco10g1423 802 FunFam Cyclic nucleotide-gated ion channel 1 546 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1423 Cco-Chr10:27327317 Cco10g1454 Cco-Chr10:27664234 2.70E-185 dispersed
Cco02g2273 Cco-Chr2:35306808 Cco10g1423 Cco-Chr10:27327317 1.60E-203 transposed
Cco04g1103 Cco-Chr4:26448001 Cco10g1423 Cco-Chr10:27327317 3.80E-174 transposed
Cco05g2909 Cco-Chr5:36631380 Cco10g1423 Cco-Chr10:27327317 3.60E-245 transposed
Cco06g1484 Cco-Chr6:25346448 Cco10g1423 Cco-Chr10:27327317 3.40E-243 transposed
Cco07g1778 Cco-Chr7:31929143 Cco10g1423 Cco-Chr10:27327317 2.10E-94 transposed
Cco10g0601 Cco-Chr10:8019795 Cco10g1423 Cco-Chr10:27327317 5.00E-97 transposed
Cco11g0474 Cco-Chr11:5052540 Cco10g1423 Cco-Chr10:27327317 1.10E-100 transposed
Cco10g1423 Cco-Chr10:27327317 Cco06g1893 Cco-Chr6:29123325 6.50E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1423 K05391 - csv:101216651 1378.62