Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1423 | ATGGAAGCCCATAAATTGGAGCTACGAAGCTCTGTTCCTCCACTTCAGATAGAAAACCGCCATGGCCAAGTATCAATGTTCTTGGCTATTACACATCCACCTGGCCCCTCCCCCATTTCACTTGCACCAACCCCAATTATATCTCCATTCCCTCCTAAACTTCTCATTTCTTTCTTCTTCTTCCTCTCTCCATCAACCTTCAATCTCTCTGTCTCTCTCACACACACACAATTCTCGCCGGGGAACACGACAAAACCCCGGAATCCGCCATGGAAGATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTCGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCAATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAATGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCGCTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAGTTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA | 2409 | 44.83 | MEAHKLELRSSVPPLQIENRHGQVSMFLAITHPPGPSPISLAPTPIISPFPPKLLISFFFFLSPSTFNLSVSLTHTQFSPGNTTKPRNPPWKMDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLNDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG | 802 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27327317 | 27331406 | - | CcPI632755_10g014230.1 | Cco10g1423 | 190381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1423 | 802 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 548 | 678 | IPR000595 | - | |
Cco10g1423 | 802 | SUPERFAMILY | Voltage-gated potassium channels | 141 | 470 | - | - | |
Cco10g1423 | 802 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 134 | 780 | - | - | |
Cco10g1423 | 802 | CDD | CAP_ED | 548 | 679 | IPR000595 | - | |
Cco10g1423 | 802 | Gene3D | Helix hairpin bin | 475 | 539 | - | - | |
Cco10g1423 | 802 | Gene3D | - | 153 | 473 | - | - | |
Cco10g1423 | 802 | Pfam | Cyclic nucleotide-binding domain | 571 | 658 | IPR000595 | - | |
Cco10g1423 | 802 | Gene3D | Jelly Rolls | 546 | 666 | IPR014710 | - | |
Cco10g1423 | 802 | SUPERFAMILY | cAMP-binding domain-like | 478 | 673 | IPR018490 | - | |
Cco10g1423 | 802 | Pfam | Ion transport protein | 150 | 475 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g1423 | 802 | MobiDBLite | consensus disorder prediction | 770 | 785 | - | - | |
Cco10g1423 | 802 | MobiDBLite | consensus disorder prediction | 770 | 802 | - | - | |
Cco10g1423 | 802 | SMART | cnmp_10 | 548 | 679 | IPR000595 | - | |
Cco10g1423 | 802 | MobiDBLite | consensus disorder prediction | 788 | 802 | - | - | |
Cco10g1423 | 802 | FunFam | Cyclic nucleotide-gated ion channel 1 | 475 | 539 | - | - | |
Cco10g1423 | 802 | FunFam | Cyclic nucleotide-gated ion channel 1 | 546 | 664 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1423 | Cco-Chr10:27327317 | Cco10g1454 | Cco-Chr10:27664234 | 2.70E-185 | dispersed | |
Cco02g2273 | Cco-Chr2:35306808 | Cco10g1423 | Cco-Chr10:27327317 | 1.60E-203 | transposed | |
Cco04g1103 | Cco-Chr4:26448001 | Cco10g1423 | Cco-Chr10:27327317 | 3.80E-174 | transposed | |
Cco05g2909 | Cco-Chr5:36631380 | Cco10g1423 | Cco-Chr10:27327317 | 3.60E-245 | transposed | |
Cco06g1484 | Cco-Chr6:25346448 | Cco10g1423 | Cco-Chr10:27327317 | 3.40E-243 | transposed | |
Cco07g1778 | Cco-Chr7:31929143 | Cco10g1423 | Cco-Chr10:27327317 | 2.10E-94 | transposed | |
Cco10g0601 | Cco-Chr10:8019795 | Cco10g1423 | Cco-Chr10:27327317 | 5.00E-97 | transposed | |
Cco11g0474 | Cco-Chr11:5052540 | Cco10g1423 | Cco-Chr10:27327317 | 1.10E-100 | transposed | |
Cco10g1423 | Cco-Chr10:27327317 | Cco06g1893 | Cco-Chr6:29123325 | 6.50E-264 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1423 | K05391 | - | csv:101216651 | 1378.62 |