Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1428 ATGGATCTGGAGAGTGCTATTGGGGGCCACCCAATCAAGAAAGATTCATGGAGAGCTGTTTTAACTTTGGCTTATCAAAGCTTGGGGGTTGTTTATGGCGATTTGAGCACTTCCCCTTTGTATGTTTACAAAAGTACTTTTGCTGAGGATATTCAGCACTCTGAATCCAACGAAGAGATTTATGGAGTTCTTTCTTTTGTTTTCTGGACTCTCACGCTCATTCCTTTGATTAAGTACGTTTTTATTGTGCTTCGAGCTGATGATAATGGCGAAGGAGGAACTTTCGCTTTGTACTCATTGCTCTGCCGCCATGCCCGAGTTAGCTCCTTGCCCAATTGCCAACTTGCAGATGAGGACCTTTCGGAATATACAAAAGATGGGATGGATTTAACCAACAAGAATACTTGTGGGTCGAGATTGAAATCGACATTAGAGAAGCACAGAGTGCTGCAGAGGGTTTTGCTTGTTCTAGCTTTGATTGGGGCTTGCATGGTGATTGGAGATGGAGTTCTTACACCTGCAATTTCTGTTTTCTCTGCGGTTTCTGGGCTGGAATTTTCCATGGCTAGAGAACACCATCGCTATGTTGAAGTCCCGGTTGCTTGTGCCATATTGGTAATCCTGTTTGCGATTCAACATTATGGAACCCATCGAGTTGGGTTTCTGTTTGCACCAGTTGTAATTACCTGGCTCCTGTGTATCAGTTCCATAGGGCTGTACAATATCTTCCACTGGAATCCACATGTTTACCGAGCACTCTCCCCATATTATATGTACAAATTTCTGAAGAAGACCCAAAGGGGAGGTTGGATGTCCCTCGGCGGAATCCTGTTATGTATTACAGGTTCAGAAGCAATGTTTGCTGATCTCGGGCACTTCTCGCAGCTATCTATCAAGATTGCTTTCTCTTTTGTGGTCTATCCATCTTTGGTCCTGGCATACATGGGACAAGCTGCTTATCTTTCTCAACATCATGGTGCGGAAAATAACTACCGAATTGGATTTTACGTGTCTGTTCCTGAGAAAATAAGAGTGCCTGTTCTTGTGATCGCCATTTTAGCCGCAGTGGTAGGAAGTCAAGCTGTCATTACTGGGACTTTTTCGATAATAAAACAGTGCTCCTCATTGGGTTGCTTCCCGAGGGTCAAAATTGTTCATACCTCCTCGAAAATCCATGGTCAGATTTATATACCGGAGATCAACTGGACGTTGATGCTCTTATGCTTGGCTATTACCATTGGCTTTCGAGACACGAAACGCATGGGCAATGCATCAGGCTTAGCAGTGATAACTGTTATGCTGGTGACAACCTGCCTAATGTCTGTAGTCATCATCTTGTGCTGGCATAAAAGCTTTCTCTATGCCATTGCCTTCATACTCATTTTCGGGTCAATCGAATCACTCTACTTTTCAGCATCTCTAATCAAGTTTCGAGAAGGGGCCTGGGTTCCCATCGCCCTCTCATTCATCTTCCTAATAGTCATGTATGTATGGCATTACGGAACGCGCAAAAAATACGAATTTGATGTTCAAAACAAAGTCTCAATCAACTGGCTCCTAGGCCTAGGTCCCAGTTTAGGCATTGTGAGAGTACGCGGGATTGGCCTCATATACACCGAACTCGTCTCAGGAATCCCTGCCATCTTCTCCCACTTCGTAACAAACCTCCCCGCCTTCCACCAAGTCCTAGTCTTCCTCTGCATCAAATCCGTCCCTGTCCCACACGTGAGACCAGGAGAAAGGTTCCTAGTAGGACGAGTTGGGCCAAAAGAGTACCGTCTCTACCGATGCATAGCACGATATGGCTATCGTGACATCCACAAAGACGACATGGAGTTCGAGAAGGACTTGGTGTGCAGCATTGCCGAGTTCATCCGGTCCGAAAAGGCAGAGACAAGCGTAAAGCTAGAAGATGTAGAAGAAAGTGAGAGAATGACAGTAGTTGGGACATCTTCAACACATGTAGATGGAGTGAGAATGTGTGAAGATGAAGGAGAAACAGCAGAAACATCAGAGGTAAGAGAGATAAAATCACCAAAAAAGCTGAGAAAAAGAGTGAGGTTTGTTGTACCAGAGAGTCCGCGAATGGAAATGGAAACGAGGAGGGAGCTGCAAGAGCTAATGGAAGCAAGAGAAGCAGGAATGGCTTTCATAATGGGACATTCATATGTGAAAGCAAAGAGAGGATCAGGTTTGGTGAAGAAAGTGGTGATAAATTATGGGTATGATTTTTTGAGAAGAAACTCAAGAGGGCCAAGTTATGCTTGGAGTGTGCCTCATGCATCTACTTTAGAGGTGGGAATGGTCTACCAAGTTTGA 2319 44.63 MDLESAIGGHPIKKDSWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSESNEEIYGVLSFVFWTLTLIPLIKYVFIVLRADDNGEGGTFALYSLLCRHARVSSLPNCQLADEDLSEYTKDGMDLTNKNTCGSRLKSTLEKHRVLQRVLLVLALIGACMVIGDGVLTPAISVFSAVSGLEFSMAREHHRYVEVPVACAILVILFAIQHYGTHRVGFLFAPVVITWLLCISSIGLYNIFHWNPHVYRALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFSFVVYPSLVLAYMGQAAYLSQHHGAENNYRIGFYVSVPEKIRVPVLVIAILAAVVGSQAVITGTFSIIKQCSSLGCFPRVKIVHTSSKIHGQIYIPEINWTLMLLCLAITIGFRDTKRMGNASGLAVITVMLVTTCLMSVVIILCWHKSFLYAIAFILIFGSIESLYFSASLIKFREGAWVPIALSFIFLIVMYVWHYGTRKKYEFDVQNKVSINWLLGLGPSLGIVRVRGIGLIYTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPGERFLVGRVGPKEYRLYRCIARYGYRDIHKDDMEFEKDLVCSIAEFIRSEKAETSVKLEDVEESERMTVVGTSSTHVDGVRMCEDEGETAETSEVREIKSPKKLRKRVRFVVPESPRMEMETRRELQELMEAREAGMAFIMGHSYVKAKRGSGLVKKVVINYGYDFLRRNSRGPSYAWSVPHASTLEVGMVYQV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27365148 27369939 + CcPI632755_10g014280.1 Cco10g1428 190386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1428 772 Pfam K+ potassium transporter C-terminal domain 533 771 IPR053952 -
Cco10g1428 772 NCBIfam potassium uptake protein 23 772 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco10g1428 772 Pfam K+ potassium transporter integral membrane domain 23 519 IPR053951 -
Cco10g1428 772 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 772 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2788 Cco-Chr5:35655765 Cco10g1428 Cco-Chr10:27365148 0.00E+00 dispersed
Cco10g1041 Cco-Chr10:22463363 Cco10g1428 Cco-Chr10:27365148 1.00E-165 dispersed
Cco10g1428 Cco-Chr10:27365148 Cco11g0046 Cco-Chr11:522500 1.70E-189 dispersed
Cco05g1438 Cco-Chr5:16234497 Cco10g1428 Cco-Chr10:27365148 1.10E-252 transposed
Cco07g0523 Cco-Chr7:6586106 Cco10g1428 Cco-Chr10:27365148 2.70E-289 transposed
Cco10g1428 Cco-Chr10:27365148 Cco09g2095 Cco-Chr9:35333752 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1428 K03549 - csv:101211664 1473.37