Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1431 ATGGACCGCAGTTTTCTATACAACCAATTCGCTCCACTGGCTGGAATGATCGCCGCCGAGTGCGCCACCGTCGGCTCAAACACCGTCTACAAAGCCATTAGCGGCCATGAAATCAGCTTCTATGTCTTCACCTTCTACACTTGTCTCGCTGCCGCTCTCGTTCTTCTTCCTTTCGCCTTAATCTTCCGCAGATCTGGCGTTTTTCCGTCCGATAAGTTGTCGTTCTTCCTCAGATTGATCAGCCTGTCGGCGATGGGAGTTGGATGTCAGCTGTTTTCGTATAAAGGTTTGGAATACAGTTCGCCGACGCTTGCTTCCGCCATTAGCAATCTCATTCCAGCTCTCACTTTCATCTTGGCCGTTCTCTTTGGGATGGAGAAACTAGCTTTGAGAAGCTCAAGCAGCATAGCCAAAATCGTTGGCTCGACAGTCTCCATAACAGGTGCACTAGTAGTGGTTCTATATAAAGGTCCAGTCATTCTATCAAACCCATTTTCTAGGCCAACCAGATTGAATCTTCCTCCTCGTCGTTTGGGCTCTTCCCAACCAAATTGGATAATGGGTGGCCTCTGCTTTTTTGCTCAGTACCTTCTCAACTCTTTCTGGTACATTGTTCTGACCCAAACGATGAACATATACCCAGATGAACTAGTTGTGGTGTGCTTATTCTATGTGTTCGAGGTCATAATAGCTGCACCAATATGCCTATTAGCGGAAGGAAACATCGTTGCTTGGAAGCTGAAAAATAGTCTGGAAGTGGTTGCTGTTTTAAACTCGGGATGTGTGGGTCAATCCTTCGTCTCTGCAATCCACACATGGGGTGTACATGTCAAAGGGCCTGTTTATGTATCAAGTTTCAGGCCACTCTCAATTGCCATTGCTGCTGCTACAGGTGTTATCTTCCTTGGGGACGATCTTCATCTTGGAAGTACTATTGGAGCAATGATAATAGCAAGTGGGTTTTACTCTATAATGTGGGGGAAAATAAAAGAAGAGGACTTGAAGGGACAGGATGGCTTCTCAAGCTTGAAGTCTTCATCAACAGATAAAATTCCATTGTTGAAAAGCTGTAAAGTTCAAAATGACTAA 1089 45.27 MDRSFLYNQFAPLAGMIAAECATVGSNTVYKAISGHEISFYVFTFYTCLAAALVLLPFALIFRRSGVFPSDKLSFFLRLISLSAMGVGCQLFSYKGLEYSSPTLASAISNLIPALTFILAVLFGMEKLALRSSSSIAKIVGSTVSITGALVVVLYKGPVILSNPFSRPTRLNLPPRRLGSSQPNWIMGGLCFFAQYLLNSFWYIVLTQTMNIYPDELVVVCLFYVFEVIIAAPICLLAEGNIVAWKLKNSLEVVAVLNSGCVGQSFVSAIHTWGVHVKGPVYVSSFRPLSIAIAAATGVIFLGDDLHLGSTIGAMIIASGFYSIMWGKIKEEDLKGQDGFSSLKSSSTDKIPLLKSCKVQND 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27395446 27401725 + CcPI632755_10g014310.1 Cco10g1431 190389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1431 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 330 - -
Cco10g1431 362 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco10g1431 362 Pfam EamA-like transporter family 21 146 IPR000620 GO:0016020(InterPro)
Cco10g1431 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0259 Cco-Chr10:2836476 Cco10g1431 Cco-Chr10:27395446 1.70E-19 dispersed
Cco10g1431 Cco-Chr10:27395446 Cco11g1361 Cco-Chr11:26446369 7.20E-37 dispersed
Cco10g1431 Cco-Chr10:27395446 Cco10g1432 Cco-Chr10:27411138 1.60E-121 tandem
Cco10g1431 Cco-Chr10:27395446 Cco09g2087 Cco-Chr9:35264875 1.40E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1431 - - - 0.0