Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1444 ATGGAGATTCTGAAGTTTCTCTTCATTCTTCTCTCTACGGCGGCGTTTTTGTCTCTATCGGAATCCGTTCCTCTCTCGGCGAATTACTACCAGAAATCCTGCCCGAGATTCAGTCAGATTATCCAAGATACAGTCACCAACAAGCAGATCACTAGCCCTTCCACCGCCGCCGGAACTCTTCGTCTCTTGCTCCACGACTGTCTTCCTAACGGCTGCGATGGCTCCGTCCTCATCTCCTCCACTCCCTTCAACAAAGCCGAGCGCGACGCCGACATCAACCTCTCTCTCCCAGGCGACGCCTTCGATGTTATTGTTCGGGCCAAGACCGCTCTCGAGCTCGCATGTCCCAACACCGTCTCCTGTGCTGACATTCTCGCCGTTGCCACTCGCGACCTCGTCACCATGGTTGGCGGACCTTACTACAATGTTCTCCTTGGTCGCAGAGATGGCCGAGTGTCTAAAGCTTCGACGATTCCTGGTGCTCTACCGAAAGCTACCTCGCCGATTCCTCAGATTATTGATATTTTTAAAGCTCGGGGGTTTACTATCCAGGAAATGGTAGCGTTAAGTGGTGCTCATACGATTGGATTCTCGCATTGTAAGGAATTCAGCTCTCAGATCTATAATTATAGCAAGTCGTCTTCGTATGATTCGCAGTATAACCCTAGATTCGCGCAAGGATTGCAGAAGGCTTGTTCTGGTTTTGAAAAGAATCCTACATTATCGGTTTTCAATGACATTATGACTCCCAATAAATTTGATAACTCTTACTTCCAGAATCTGCCGAAGGGATTGGGGATCTTGCAGTCTGATCATGGGTTGTATAATGATTGGAGGACGAGGCCATTCGTAGAGGCGTATGCGGCAGATGAGAAAAAGTTCTTCAACGATTTTGCTCGGGCGATGGAGAAGTTGAGTAATTATAAAGTTGTGACAGGCAATCAAGGGGAGATTCGGCATAAGTGTGATGCGATTAATTGA 981 48.11 MEILKFLFILLSTAAFLSLSESVPLSANYYQKSCPRFSQIIQDTVTNKQITSPSTAAGTLRLLLHDCLPNGCDGSVLISSTPFNKAERDADINLSLPGDAFDVIVRAKTALELACPNTVSCADILAVATRDLVTMVGGPYYNVLLGRRDGRVSKASTIPGALPKATSPIPQIIDIFKARGFTIQEMVALSGAHTIGFSHCKEFSSQIYNYSKSSSYDSQYNPRFAQGLQKACSGFEKNPTLSVFNDIMTPNKFDNSYFQNLPKGLGILQSDHGLYNDWRTRPFVEAYAADEKKFFNDFARAMEKLSNYKVVTGNQGEIRHKCDAIN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27562999 27563979 + CcPI632755_10g014440.1 Cco10g1444 190402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1444 326 Gene3D Peroxidase, domain 2 163 305 - -
Cco10g1444 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 PANTHER - 9 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 FunFam Peroxidase 28 168 - -
Cco10g1444 326 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco10g1444 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cco10g1444 326 FunFam Peroxidase 163 305 - -
Cco10g1444 326 Pfam Peroxidase 42 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g1444 326 Gene3D - 28 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1444 Cco-Chr10:27562999 Cco11g0730 Cco-Chr11:8065039 1.10E-71 dispersed
Cco01g1437 Cco-Chr1:26147403 Cco10g1444 Cco-Chr10:27562999 2.60E-110 wgd
Cco10g1444 Cco-Chr10:27562999 Cco06g1876 Cco-Chr6:28979069 4.00E-103 wgd
Cco10g1444 Cco-Chr10:27562999 Cco09g2080 Cco-Chr9:35195624 9.70E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1444 K00430 - csv:101219829 629.402