Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1445 ATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGATTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGAGCATCGCGGTTTAAAATCCCACGACTGTCCTAAATCCGACCGGAACAGCCGAAAAGTGGTGGTTTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGAAAGGACGGCGGCGACGAGACCAGGATTTTGGAAAGGCATCACGAATCGGGAGATTGCGATCCGAGCAAGAAGAAGAAGCCTACATGTGCGGTGAGGCGGTGCCGGGAGATTCTTACGTTTTCCAATACTTGTGTTTGTAAAACCTGCCGGATGAAGGTGTGCTTGAAACACCGGTTTCCGGCGGAGCATGGTTGTGGACGGCCGTCGTTGACGGCAGCGGCGGTGGTAGATAAAGGGCGGTGGAATGAAAAGTTTATGGCGGCTTTAGGGTTGAGGAGCGGTGGCGATTGTGGGAAGAGGGAACGGCCGACGGCAGCGAACGGATCTTCTCCGACTGCCCCATCTGTTAAAGCTTGTTGA 585 56.24 MAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLEHRGLKSHDCPKSDRNSRKVVVCEICSTSIETTGKDGGDETRILERHHESGDCDPSKKKKPTCAVRRCREILTFSNTCVCKTCRMKVCLKHRFPAEHGCGRPSLTAAAVVDKGRWNEKFMAALGLRSGGDCGKRERPTAANGSSPTAPSVKAC 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27569636 27570314 + CcPI632755_10g014450.1 Cco10g1445 190403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1445 194 Gene3D - 81 156 IPR035896 -
Cco10g1445 194 MobiDBLite consensus disorder prediction 180 194 - -
Cco10g1445 194 Pfam AN1-like Zinc finger 17 55 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 Pfam AN1-like Zinc finger 104 141 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 Gene3D - 2 70 IPR035896 -
Cco10g1445 194 SMART AN1_Zf_4 17 56 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 SUPERFAMILY AN1-like Zinc finger 10 57 IPR035896 -
Cco10g1445 194 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 9 169 - GO:0005737(PANTHER)
Cco10g1445 194 MobiDBLite consensus disorder prediction 171 194 - -
Cco10g1445 194 ProSiteProfiles Zinc finger AN1-type profile. 11 59 IPR000058 GO:0008270(InterPro)
Cco10g1445 194 SUPERFAMILY AN1-like Zinc finger 64 144 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0455 Cco-Chr4:14438059 Cco10g1445 Cco-Chr10:27569636 2.40E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1445 - - - 0.0