Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1454 ATGATCGCAGTTTCAATTGAATCAGAATATGAACCAATGTATATATGCTTCTGCAGAACCAAAATCCAAAGACTTCGCGAGAAGAAAGAAGAAAACGCACAGACAATTTTCCATTTTCTAAATATAGAAACGCAATCCTGCGAGAAAATTGGATCTCCAATGGAAGAAAAAGAGAAACAAAATGAAAGATCGGAAGAGCAATTGGCTCGGCACCGTTTGAATATCTCGGCGATCAACTCTCGCATCTATGTTCTCCATTGCCACAAAATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGACTTGGATTCAAATTTGTCAATGCCCTCTGGAACAAGCAAAATGAAGAAATGTCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATTAGCCGATCGAAGCCACAAAATGCGTCCAAATCGTTCCGAAGAGGAGTCCAAAGGAGCTCCGACGGAATCAAAACCCTAGGTCGGTCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATTTGAAAGTATCGGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAATAAGCTTTTCGTGCTGTGCTGTATCCTCGCCGTCTCTGTCGATCCACTCTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGCATGGCGTTTCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGAGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACGGAAATCGCCCAGCGGTATCTTCAGCGCTACTTTGTAGCCGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGCTCGGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGCCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGCCAAGCATGCAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGTCCGGTTATAAGGATTGGAGAAATATTAGCGTTAAAGTTCTCACTAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTAGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCTTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAACAATGGATGCACCATCGACTTCTTCCGCCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTTTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTATTTGCGAACATGGATGAACGTCTTCTAGACGCAATATGCGAGAGGCTGAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAGGGCGACCCAGTCGACGAAATGCTTTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGGAGCGGCTTCTACAACCGCGGCGTATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCCAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCATGCCCTTACCGAGGTTGAAGCCTTCGCCTTAGAGGCTGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGGCGCCTGCATAGCCGGCAGGTTCAACACACCTTCAGATTCTACTCTCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGGTTGCGGAGCTGCGTCGGAAGGAGGAGGAAGAAGAGGATGCAGCGGCGGCTGCGGCTGCGTATGGCACGTCGAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGGGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 2475 48.4 MIAVSIESEYEPMYICFCRTKIQRLREKKEENAQTIFHFLNIETQSCEKIGSPMEEKEKQNERSEEQLARHRLNISAINSRIYVLHCHKMFDCGGYKSQYIGGHKEKFVRLDDLDSNLSMPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMSGYKDWRNISVKVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKVAELRRKEEEEEDAAAAAAAYGTSRLGATILASRFAANALRGHRLRNVSGKSLINLQKPAEPDFSVYKGE 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27664234 27670163 + CcPI632755_10g014540.1 Cco10g1454 190412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1454 824 SUPERFAMILY Voltage-gated potassium channels 195 522 - -
Cco10g1454 824 CDD CAP_ED 600 731 IPR000595 -
Cco10g1454 824 FunFam Cyclic nucleotide-gated ion channel 1 598 716 - -
Cco10g1454 824 Pfam Ion transport protein 202 527 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1454 824 SMART cnmp_10 600 731 IPR000595 -
Cco10g1454 824 Coils Coil 748 771 - -
Cco10g1454 824 ProSiteProfiles IQ motif profile. 736 765 - -
Cco10g1454 824 Gene3D Jelly Rolls 598 718 IPR014710 -
Cco10g1454 824 Coils Coil 54 81 - -
Cco10g1454 824 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 174 801 - -
Cco10g1454 824 FunFam Cyclic nucleotide-gated ion channel 1 527 591 - -
Cco10g1454 824 Gene3D - 205 525 - -
Cco10g1454 824 ProSiteProfiles cAMP/cGMP binding motif profile. 600 730 IPR000595 -
Cco10g1454 824 Gene3D Helix hairpin bin 527 591 - -
Cco10g1454 824 SUPERFAMILY cAMP-binding domain-like 530 720 IPR018490 -
Cco10g1454 824 Pfam Cyclic nucleotide-binding domain 621 711 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1568 Cco-Chr2:28369951 Cco10g1454 Cco-Chr10:27664234 3.60E-294 dispersed
Cco05g0113 Cco-Chr5:904597 Cco10g1454 Cco-Chr10:27664234 2.00E-76 dispersed
Cco05g1044 Cco-Chr5:9207580 Cco10g1454 Cco-Chr10:27664234 5.70E-76 dispersed
Cco05g1045 Cco-Chr5:9223707 Cco10g1454 Cco-Chr10:27664234 5.60E-112 dispersed
Cco05g1046 Cco-Chr5:9236655 Cco10g1454 Cco-Chr10:27664234 1.20E-120 dispersed
Cco06g1893 Cco-Chr6:29123325 Cco10g1454 Cco-Chr10:27664234 2.70E-181 dispersed
Cco10g1423 Cco-Chr10:27327317 Cco10g1454 Cco-Chr10:27664234 2.70E-185 dispersed
Cco10g1454 Cco-Chr10:27664234 Cco11g0474 Cco-Chr11:5052540 8.20E-105 dispersed
Cco10g1454 Cco-Chr10:27664234 Cco01g0051 Cco-Chr1:383331 6.10E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1454 K05391 - csv:101221166 1365.52