Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1473 | ATGATGAAGGTTGTGTTGGTGTTGGTTTCACTGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTAGCGAAATATAACGGGCCGTGTTTGGCGACGAATCCGATTGACCGTTGTTGGCGCTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACTACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCGGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTGTTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGACTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCAGCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGACGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA | 1311 | 48.05 | MMKVVLVLVSLAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAVQKRPLWIIFGRSMIIRLTKELMVTSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISASGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27827807 | 27829388 | + | CcPI632755_10g014730.1 | Cco10g1473 | 190431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1473 | 436 | Pfam | Pectate lyase, N terminus | 22 | 76 | IPR007524 | GO:0030570(InterPro) | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 109 | 126 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 335 | 354 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 169 | 185 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 233 | 254 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 133 | 158 | IPR018082 | - | |
Cco10g1473 | 436 | PRINTS | Pollen allergen Amb family signature | 377 | 401 | IPR018082 | - | |
Cco10g1473 | 436 | SMART | amb_all | 161 | 358 | IPR002022 | - | |
Cco10g1473 | 436 | Gene3D | - | 86 | 429 | IPR012334 | - | |
Cco10g1473 | 436 | SUPERFAMILY | Pectin lyase-like | 87 | 426 | IPR011050 | - | |
Cco10g1473 | 436 | Pfam | Pectate lyase | 171 | 352 | IPR002022 | - | |
Cco10g1473 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 433 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1579 | Cco-Chr1:28487067 | Cco10g1473 | Cco-Chr10:27827807 | 3.20E-180 | dispersed | |
Cco08g1046 | Cco-Chr8:22251988 | Cco10g1473 | Cco-Chr10:27827807 | 1.50E-185 | dispersed | |
Cco09g2155 | Cco-Chr9:35942371 | Cco10g1473 | Cco-Chr10:27827807 | 4.10E-129 | dispersed | |
Cco10g1473 | Cco-Chr10:27827807 | Cco05g2722 | Cco-Chr5:35129545 | 6.80E-191 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1473 | K01728 | - | csv:101202789 | 825.469 |