Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1473 ATGATGAAGGTTGTGTTGGTGTTGGTTTCACTGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTAGCGAAATATAACGGGCCGTGTTTGGCGACGAATCCGATTGACCGTTGTTGGCGCTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACTACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCGGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTGTTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGACTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCAGCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGACGGACTCATCGACGCAATCCAAGGCTCCACCGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 48.05 MMKVVLVLVSLAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAVQKRPLWIIFGRSMIIRLTKELMVTSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISASGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27827807 27829388 + CcPI632755_10g014730.1 Cco10g1473 190431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1473 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cco10g1473 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cco10g1473 436 SMART amb_all 161 358 IPR002022 -
Cco10g1473 436 Gene3D - 86 429 IPR012334 -
Cco10g1473 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
Cco10g1473 436 Pfam Pectate lyase 171 352 IPR002022 -
Cco10g1473 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1579 Cco-Chr1:28487067 Cco10g1473 Cco-Chr10:27827807 3.20E-180 dispersed
Cco08g1046 Cco-Chr8:22251988 Cco10g1473 Cco-Chr10:27827807 1.50E-185 dispersed
Cco09g2155 Cco-Chr9:35942371 Cco10g1473 Cco-Chr10:27827807 4.10E-129 dispersed
Cco10g1473 Cco-Chr10:27827807 Cco05g2722 Cco-Chr5:35129545 6.80E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1473 K01728 - csv:101202789 825.469