Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1476 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCACTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGACGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGACTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGATCTTCTTCAGAGCTGCAATGCCCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTCCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1167 46.53 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQHCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQDLLQSCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27846823 27851208 + CcPI632755_10g014760.1 Cco10g1476 190434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1476 388 MobiDBLite consensus disorder prediction 31 62 - -
Cco10g1476 388 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677(InterPro)
Cco10g1476 388 CDD AP2 163 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 SMART rav1_2 65 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 SMART rav1_2 164 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Cco10g1476 388 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 CDD AP2 64 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 MobiDBLite consensus disorder prediction 41 62 - -
Cco10g1476 388 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 255 - -
Cco10g1476 388 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 Pfam AP2 domain 163 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 Pfam AP2 domain 64 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1476 388 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0332 Cco-Chr9:2933280 Cco10g1476 Cco-Chr10:27846823 1.40E-68 dispersed
Cco10g1476 Cco-Chr10:27846823 Cco11g0916 Cco-Chr11:13224340 1.50E-64 dispersed
Cco10g1476 Cco-Chr10:27846823 Cco08g1029 Cco-Chr8:22126054 2.40E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60125 PF00847 AP2 2.50E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1476 - - - 0.0