Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1476 | ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCACTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGACGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGACTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGATCTTCTTCAGAGCTGCAATGCCCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTCCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA | 1167 | 46.53 | MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQHCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQDLLQSCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27846823 | 27851208 | + | CcPI632755_10g014760.1 | Cco10g1476 | 190434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1476 | 388 | MobiDBLite | consensus disorder prediction | 31 | 62 | - | - | |
Cco10g1476 | 388 | SUPERFAMILY | DNA-binding domain | 64 | 130 | IPR016177 | GO:0003677(InterPro) | |
Cco10g1476 | 388 | CDD | AP2 | 163 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | PRINTS | Ethylene responsive element binding protein signature | 204 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | SMART | rav1_2 | 65 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | SMART | rav1_2 | 164 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | FunFam | AP2-like ethylene-responsive transcription factor | 163 | 224 | - | - | |
Cco10g1476 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 164 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | CDD | AP2 | 64 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Cco10g1476 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 255 | - | - | |
Cco10g1476 | 388 | Gene3D | AP2/ERF domain | 64 | 130 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | Gene3D | AP2/ERF domain | 163 | 223 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | Pfam | AP2 domain | 163 | 214 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | Pfam | AP2 domain | 64 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1476 | 388 | SUPERFAMILY | DNA-binding domain | 163 | 224 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0332 | Cco-Chr9:2933280 | Cco10g1476 | Cco-Chr10:27846823 | 1.40E-68 | dispersed | |
Cco10g1476 | Cco-Chr10:27846823 | Cco11g0916 | Cco-Chr11:13224340 | 1.50E-64 | dispersed | |
Cco10g1476 | Cco-Chr10:27846823 | Cco08g1029 | Cco-Chr8:22126054 | 2.40E-94 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60125 | PF00847 | AP2 | 2.50E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1476 | - | - | - | 0.0 |