Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1485 | ATGATTAAGAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTAGAATGTATGGTTTTGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAACGAACCATCTCCACTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACCGAGCCTTTGTCTACCTTCTTAGAGTATATCACATATGGTCACATGATAGACAATGTTGTCCTTATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAACACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGAGATGATCGAAGGAAGTTGTATTCCAATTTTGGATTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGACTATGCTTAGCATTTGAGCAGCAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTAATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGGTTCACGACAGTGTTGTCTTCATATTTTAG | 1206 | 43.45 | MIKNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF | 401 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27872095 | 27877794 | - | CcPI632755_10g014850.1 | Cco10g1485 | 190443 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1485 | 401 | Gene3D | - | 256 | 359 | IPR035067 | - | |
| Cco10g1485 | 401 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 51 | 401 | IPR016727 | GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cco10g1485 | 401 | Gene3D | - | 141 | 249 | IPR035067 | - | |
| Cco10g1485 | 401 | PIRSF | V-ATP_synth_D | 54 | 400 | IPR016727 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cco10g1485 | 401 | FunFam | V-type proton ATPase subunit | 256 | 359 | - | - | |
| Cco10g1485 | 401 | FunFam | V-type proton ATPase subunit | 141 | 255 | - | - | |
| Cco10g1485 | 401 | Pfam | ATP synthase (C/AC39) subunit | 66 | 394 | IPR002843 | GO:0046961(InterPro) | |
| Cco10g1485 | 401 | FunFam | V-type proton ATPase subunit | 64 | 178 | - | - | |
| Cco10g1485 | 401 | Gene3D | ATP synthase (C/AC39) subunit, domain 3 | 64 | 385 | IPR044911 | - | |
| Cco10g1485 | 401 | SUPERFAMILY | V-type ATP synthase subunit C | 64 | 399 | IPR036079 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1485 | K02146 | - | - | csv:101203260 | 715.687 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi14g1489 | . | Blo11g00688 | . | . | . | . | . | . | . | Cmo11g01055 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla10g01421 | Cam10g1191 | Cec10g1502 | Cco10g1485 | Clacu10g1482 | Cmu10g2246 | Cre10g1627 | . | . | . | Cone16ag0861 | . | . | Chy04g01523 | Cme04g01965 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cpe04g00069 | . | Bhi11g03018 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa03g03857 | . | . |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco02g0512 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.5 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 0.0e+00 | 1184.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 1.4e-298 | 1022.3 | |
| Cco02g0512 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1234.6 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.4 | 0.0e+00 | 1182.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 1.6e-297 | 1018.8 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1616 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco08g1617 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco11g1626 | . | 42 | 205 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 41 | 162 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cco08g1616 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1617 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1462 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cco05g1950 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 5.3e-70 | 261.2 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco05g1950 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.0 | 1.4e-72 | 269.6 | |
| Cco08g1462 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 | |
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco03g0186 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.4 | |
| Cco03g1782 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cco02g0431 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cco10g2018 | . | 92 | 199 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cco01g0853 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 3.2e-181 | 631.3 | |
| Cco09g2423 | . | 1020 | 1280 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.0e-117 | 419.9 | |
| Cco10g1623 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.5e-206 | 715.7 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco02g0431 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cco05g1602 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 74.1 | 1.1e-65 | 246.5 | |
| Cco02g0431 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.3e-192 | 666.8 | |
| Cco05g1602 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.2e-91 | 330.5 | |
| Cco09g0164 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cco02g0431 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cco02g0431 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cco02g0431 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cco01g0853 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 3.2e-181 | 631.3 | |
| Cco09g2423 | . | 1020 | 1280 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.0e-117 | 419.9 | |
| Cco05g1602 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.2e-91 | 330.5 | |
| Cco05g1602 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.0 | 3.9e-76 | 281.6 | |
| Cco05g1602 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 74.1 | 1.1e-65 | 246.5 | |
| Cco03g1782 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cco10g2018 | . | 92 | 199 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cco10g1623 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.5e-206 | 715.7 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco02g0512 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.5 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 0.0e+00 | 1184.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 1.4e-298 | 1022.3 | |
| Cco02g0512 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1234.6 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.4 | 0.0e+00 | 1182.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 1.6e-297 | 1018.8 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 41 | 162 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cco08g1616 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1617 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1616 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco08g1617 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco11g1626 | . | 42 | 205 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco05g1950 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.0 | 1.4e-72 | 269.6 | |
| Cco08g1462 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cco08g1462 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cco05g1950 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 5.3e-70 | 261.2 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 5.5e-199 | 690.3 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.3e-192 | 666.8 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cco03g0186 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.4 | |
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002725 | 1 | 2 | 2 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 | 2 | 2 | 1 | 3 | 2 | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 1 | 2 | 5 | 2 | 52 |