Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1496 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCGACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTGCTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCTCCGCCGCCTGCGGCGGCCCACCGTAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.13 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIAAPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28049765 28050655 - CcPI632755_10g014960.1 Cco10g1496 190454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1496 296 MobiDBLite consensus disorder prediction 131 159 - -
Cco10g1496 296 MobiDBLite consensus disorder prediction 254 296 - -
Cco10g1496 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cco10g1496 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cco10g1496 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cco10g1496 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cco10g1496 296 MobiDBLite consensus disorder prediction 16 60 - -
Cco10g1496 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cco10g1496 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cco10g1496 296 Gene3D - 191 259 - -
Cco10g1496 296 MobiDBLite consensus disorder prediction 30 44 - -
Cco10g1496 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1496 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1496 Cco-Chr10:28049765 Cco11g0011 Cco-Chr11:140881 3.20E-35 dispersed
Cco01g1627 Cco-Chr1:28965930 Cco10g1496 Cco-Chr10:28049765 2.90E-31 transposed
Cco10g1496 Cco-Chr10:28049765 Cco05g2700 Cco-Chr5:34914552 5.90E-45 wgd
Cco10g1496 Cco-Chr10:28049765 Cco06g1826 Cco-Chr6:28553005 2.70E-13 wgd
Cco10g1496 Cco-Chr10:28049765 Cco09g2028 Cco-Chr9:34533493 2.50E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60127 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cco TF