Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1496 | ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCGACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTGCTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCTCCGCCGCCTGCGGCGGCCCACCGTAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA | 891 | 57.13 | MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIAAPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28049765 | 28050655 | - | CcPI632755_10g014960.1 | Cco10g1496 | 190454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1496 | 296 | MobiDBLite | consensus disorder prediction | 131 | 159 | - | - | |
Cco10g1496 | 296 | MobiDBLite | consensus disorder prediction | 254 | 296 | - | - | |
Cco10g1496 | 296 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 63 | 114 | IPR006456 | - | |
Cco10g1496 | 296 | SUPERFAMILY | Homeodomain-like | 191 | 259 | IPR009057 | - | |
Cco10g1496 | 296 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 63 | 114 | IPR006456 | - | |
Cco10g1496 | 296 | Pfam | ZF-HD protein dimerisation region | 61 | 115 | IPR006456 | - | |
Cco10g1496 | 296 | MobiDBLite | consensus disorder prediction | 16 | 60 | - | - | |
Cco10g1496 | 296 | NCBIfam | homeobox domain, ZF-HD class | 198 | 255 | IPR006455 | - | |
Cco10g1496 | 296 | FunFam | Zinc-finger homeodomain protein 2 | 187 | 259 | - | - | |
Cco10g1496 | 296 | Gene3D | - | 191 | 259 | - | - | |
Cco10g1496 | 296 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cco10g1496 | 296 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 45 | 256 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1496 | Cco-Chr10:28049765 | Cco11g0011 | Cco-Chr11:140881 | 3.20E-35 | dispersed | |
Cco01g1627 | Cco-Chr1:28965930 | Cco10g1496 | Cco-Chr10:28049765 | 2.90E-31 | transposed | |
Cco10g1496 | Cco-Chr10:28049765 | Cco05g2700 | Cco-Chr5:34914552 | 5.90E-45 | wgd | |
Cco10g1496 | Cco-Chr10:28049765 | Cco06g1826 | Cco-Chr6:28553005 | 2.70E-13 | wgd | |
Cco10g1496 | Cco-Chr10:28049765 | Cco09g2028 | Cco-Chr9:34533493 | 2.50E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60127 | PF04770 | ZF-HD_dimer | 7.50E-29 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1496 | - | - | - | 0.0 |