Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1496 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCGACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTGCTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCTCCGCCGCCTGCGGCGGCCCACCGTAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.13 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIAAPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28049765 28050655 - CcPI632755_10g014960.1 Cco10g1496 190454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1496 296 MobiDBLite consensus disorder prediction 131 159 - -
Cco10g1496 296 MobiDBLite consensus disorder prediction 254 296 - -
Cco10g1496 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cco10g1496 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cco10g1496 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cco10g1496 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cco10g1496 296 MobiDBLite consensus disorder prediction 16 60 - -
Cco10g1496 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cco10g1496 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cco10g1496 296 Gene3D - 191 259 - -
Cco10g1496 296 MobiDBLite consensus disorder prediction 30 44 - -
Cco10g1496 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1496 Cco-Chr10:28049765 Cco11g0011 Cco-Chr11:140881 3.20E-35 dispersed
Cco01g1627 Cco-Chr1:28965930 Cco10g1496 Cco-Chr10:28049765 2.90E-31 transposed
Cco10g1496 Cco-Chr10:28049765 Cco05g2700 Cco-Chr5:34914552 5.90E-45 wgd
Cco10g1496 Cco-Chr10:28049765 Cco06g1826 Cco-Chr6:28553005 2.70E-13 wgd
Cco10g1496 Cco-Chr10:28049765 Cco09g2028 Cco-Chr9:34533493 2.50E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60127 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1496 - - - 0.0