Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1498 ATGGCGAGAGAGATCCCAAAATCAAGCAATGAAGAAGCGTTCATCTCCTTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCTCCGGAGTTCTCAAGAAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTTGTGTTCGTGACGTGTGGGGCGGCGGCATTGAGTGTTGGTCATGAACGGGAAGTGTCGAAGCTTGGAGCATCGATTTCCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAATCCGGCCGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAACCAGGTTCCACTGTATGCAGCAGCTCAATTAAGTGGAGCTACAACAGCAGCCTTTACATTGCGCATATTATTGGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTCTAAAGCACTCCTCATAGAGATTGTTGTCTCATTCTGTATGATGTTTGTCACATCTGCGGTTGCTACCGACACAAAAGCTATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGTATGTATCACATCCATCTTTGCTGGGCCAATATCGGGTGGGTCGATGAACCCAGCAAGGTCAATTGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGCCCAGTTACTGGGACATTGCTTGGGGCATTTTCATATAACTTCGTACGAGCCACTGAAAAACATACCCATCCACTCTCTTTACATTGA 795 48.55 MAREIPKSSNEEAFISLGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVGHEREVSKLGASISGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWNQVPLYAAAQLSGATTAAFTLRILLDPIQDLGTTSPSGPASKALLIEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVTGTLLGAFSYNFVRATEKHTHPLSLH 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28105304 28108734 - CcPI632755_10g014980.1 Cco10g1498 190456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1498 264 Gene3D Glycerol uptake facilitator protein. 18 260 IPR023271 -
Cco10g1498 264 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Cco10g1498 264 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 PANTHER AQUAPORIN NIP2-1 36 256 IPR034294 -
Cco10g1498 264 Pfam Major intrinsic protein 39 248 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1498 264 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1269 Cco-Chr5:12511338 Cco10g1498 Cco-Chr10:28105304 1.30E-54 dispersed
Cco10g1498 Cco-Chr10:28105304 Cco10g1499 Cco-Chr10:28147248 2.00E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1498 K09874 - csv:101205456 425.631