Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1506 | ATGATGTGGAATAATTGGATATGGGTGGTGGGTTTATTATGGTTGTTGGGATTATGGGGATGCAGAGTTGTGAATTGGGTTTGGGTTAGGCCGAGAAAACTTGAGAAGTTCTTGAGACAGCAAGGCCTCGCCGGCAACTCTTATCGCTTTCTCTTGGGGGATACAAAGGAGATTGCGGCGGCCGTCCACCAAGCCAGATCACAGCCGATGACCTTCTCCCATGATATTGCCCCACGCGCCACCCCTACCTCTCATACCACCATCCACAAATACGGTAAGGATTCTTTCACATGGGTTGGCACAACTCCAAGAGTGTATATAACAGAGCCTGAACAAGTGAAGATTGTTTTTTCTCAAATAAATGATATTCGTAAGACATCTTCTTTTCCCCTTAGACGAAGAGTGGGAAGTGGGCTTGTCTCTCTTGAGGGTTCTAAATGGGCTAAACATAGAAAGATCATCAACCCTGCATTTCACATGGAGAAGTTGAAGGAAATGTTTCCAGCATTCTCCAAGAGTTGTGGGGAGATGGTTAACAAATGGGAAAAGATGATTCCTGAAGAAGGACGTTGTGAAATAGATGTATGGCCTGATTTGCAAAATATGGCTGCCGATGTGATTTCTAGAACTGCATTTGGAAGTAGTTACGAGGAAGGGGAAAAGATCTTCCAGCTCTTGAAAGAGTGGGCTAAGCTATTGATGACATACCTAACAAAGGGAGCTTATTTCATTCCAGGGTTGAGGTATATGCCAACAAAATTAAACAAGAGAATGGGAGAGATTGATAGGAAAATACGAGACATGGTTTGGGGTATTATAAGCAAAAGACAGAATGCTATGAAGAAAGGCGAAGGTTCCAATAATGAAGATCTATTAGGCATTCTTTTAGAATCAAATGCAAATCAAATTGAAGAACAAAAAAACAAGAAAGATGTTGGAATGAGCATAGAAGAAGTAATAAGTGAATGCAGGCTTTTCTACTTTGCTGGGCAAGAAACCACAGCTGCATTGCTTGCTTGGACCATGGTTCTACTTGGTCGATACTCAGAGTGGCAAGACCGAGCAAGAGCAGAAGTCTTTGAGGTTTTTGGTGATAATAAGAAATGGGATTTTGATGGTCTAAGTCGTCTAAGAGTAGTAACTATGATTCTAAATGAAGTCCTTAGGCTATACCCTCCCGTTGGAATGCTAGCTCGAGAGATTCACAAGGAAACAAAATTGGGAAATGTTACATTACCAGTTGGAGTATCAATAGGAATACCAATATTATCCATACACCATGACCCAAAAATATGGGGTGAAGATGCACTTGAGTTCAAACCAGAAAGATTTTCAGAAGGAATCTCCAAAGCAACAAAGAATCAAGTATGCTTTATCCCTTTTGGATGGGGTCCTCGAATTTGCCTTGGCCAAAACTTTGCGTTGATTGAAGCCAAAATAGCACTATCCATGATTTTGCAACAATTCTCATTCACACTTTCTCCAACTTATACTCATGCCCCTATTGCAAACATCACTATTCAACCACAACATGGGGCTCATCTCGTCCTTCGTAAGCTATAA | 1563 | 41.39 | MMWNNWIWVVGLLWLLGLWGCRVVNWVWVRPRKLEKFLRQQGLAGNSYRFLLGDTKEIAAAVHQARSQPMTFSHDIAPRATPTSHTTIHKYGKDSFTWVGTTPRVYITEPEQVKIVFSQINDIRKTSSFPLRRRVGSGLVSLEGSKWAKHRKIINPAFHMEKLKEMFPAFSKSCGEMVNKWEKMIPEEGRCEIDVWPDLQNMAADVISRTAFGSSYEEGEKIFQLLKEWAKLLMTYLTKGAYFIPGLRYMPTKLNKRMGEIDRKIRDMVWGIISKRQNAMKKGEGSNNEDLLGILLESNANQIEEQKNKKDVGMSIEEVISECRLFYFAGQETTAALLAWTMVLLGRYSEWQDRARAEVFEVFGDNKKWDFDGLSRLRVVTMILNEVLRLYPPVGMLAREIHKETKLGNVTLPVGVSIGIPILSIHHDPKIWGEDALEFKPERFSEGISKATKNQVCFIPFGWGPRICLGQNFALIEAKIALSMILQQFSFTLSPTYTHAPIANITIQPQHGAHLVLRKL | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28251196 | 28255682 | + | CcPI632755_10g015060.1 | Cco10g1506 | 190464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1506 | 520 | CDD | CYP72 | 82 | 516 | - | - | |
| Cco10g1506 | 520 | Gene3D | Cytochrome P450 | 27 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | Pfam | Cytochrome P450 | 89 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 17 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Cco10g1506 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco10g1506 | 520 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1506 | 520 | FunFam | Cytochrome P450 734A1 | 28 | 520 | - | - | |
| Cco10g1506 | 520 | SUPERFAMILY | Cytochrome P450 | 83 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g1574 | Cco-Chr3:30369716 | Cco10g1506 | Cco-Chr10:28251196 | 8.30E-140 | dispersed | |
| Cco05g2626 | Cco-Chr5:34417115 | Cco10g1506 | Cco-Chr10:28251196 | 2.40E-110 | dispersed | |
| Cco05g2627 | Cco-Chr5:34426823 | Cco10g1506 | Cco-Chr10:28251196 | 1.80E-105 | dispersed | |
| Cco06g0870 | Cco-Chr6:10727201 | Cco10g1506 | Cco-Chr10:28251196 | 2.50E-09 | dispersed | |
| Cco07g0560 | Cco-Chr7:7274832 | Cco10g1506 | Cco-Chr10:28251196 | 4.20E-78 | dispersed | |
| Cco10g1506 | Cco-Chr10:28251196 | Cco11g1763 | Cco-Chr11:30369079 | 5.80E-189 | dispersed | |
| Cco10g1506 | Cco-Chr10:28251196 | Cco11g0302 | Cco-Chr11:3027149 | 3.60E-106 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1506 | - | - | - | 0.0 |