Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1506 ATGATGTGGAATAATTGGATATGGGTGGTGGGTTTATTATGGTTGTTGGGATTATGGGGATGCAGAGTTGTGAATTGGGTTTGGGTTAGGCCGAGAAAACTTGAGAAGTTCTTGAGACAGCAAGGCCTCGCCGGCAACTCTTATCGCTTTCTCTTGGGGGATACAAAGGAGATTGCGGCGGCCGTCCACCAAGCCAGATCACAGCCGATGACCTTCTCCCATGATATTGCCCCACGCGCCACCCCTACCTCTCATACCACCATCCACAAATACGGTAAGGATTCTTTCACATGGGTTGGCACAACTCCAAGAGTGTATATAACAGAGCCTGAACAAGTGAAGATTGTTTTTTCTCAAATAAATGATATTCGTAAGACATCTTCTTTTCCCCTTAGACGAAGAGTGGGAAGTGGGCTTGTCTCTCTTGAGGGTTCTAAATGGGCTAAACATAGAAAGATCATCAACCCTGCATTTCACATGGAGAAGTTGAAGGAAATGTTTCCAGCATTCTCCAAGAGTTGTGGGGAGATGGTTAACAAATGGGAAAAGATGATTCCTGAAGAAGGACGTTGTGAAATAGATGTATGGCCTGATTTGCAAAATATGGCTGCCGATGTGATTTCTAGAACTGCATTTGGAAGTAGTTACGAGGAAGGGGAAAAGATCTTCCAGCTCTTGAAAGAGTGGGCTAAGCTATTGATGACATACCTAACAAAGGGAGCTTATTTCATTCCAGGGTTGAGGTATATGCCAACAAAATTAAACAAGAGAATGGGAGAGATTGATAGGAAAATACGAGACATGGTTTGGGGTATTATAAGCAAAAGACAGAATGCTATGAAGAAAGGCGAAGGTTCCAATAATGAAGATCTATTAGGCATTCTTTTAGAATCAAATGCAAATCAAATTGAAGAACAAAAAAACAAGAAAGATGTTGGAATGAGCATAGAAGAAGTAATAAGTGAATGCAGGCTTTTCTACTTTGCTGGGCAAGAAACCACAGCTGCATTGCTTGCTTGGACCATGGTTCTACTTGGTCGATACTCAGAGTGGCAAGACCGAGCAAGAGCAGAAGTCTTTGAGGTTTTTGGTGATAATAAGAAATGGGATTTTGATGGTCTAAGTCGTCTAAGAGTAGTAACTATGATTCTAAATGAAGTCCTTAGGCTATACCCTCCCGTTGGAATGCTAGCTCGAGAGATTCACAAGGAAACAAAATTGGGAAATGTTACATTACCAGTTGGAGTATCAATAGGAATACCAATATTATCCATACACCATGACCCAAAAATATGGGGTGAAGATGCACTTGAGTTCAAACCAGAAAGATTTTCAGAAGGAATCTCCAAAGCAACAAAGAATCAAGTATGCTTTATCCCTTTTGGATGGGGTCCTCGAATTTGCCTTGGCCAAAACTTTGCGTTGATTGAAGCCAAAATAGCACTATCCATGATTTTGCAACAATTCTCATTCACACTTTCTCCAACTTATACTCATGCCCCTATTGCAAACATCACTATTCAACCACAACATGGGGCTCATCTCGTCCTTCGTAAGCTATAA 1563 41.39 MMWNNWIWVVGLLWLLGLWGCRVVNWVWVRPRKLEKFLRQQGLAGNSYRFLLGDTKEIAAAVHQARSQPMTFSHDIAPRATPTSHTTIHKYGKDSFTWVGTTPRVYITEPEQVKIVFSQINDIRKTSSFPLRRRVGSGLVSLEGSKWAKHRKIINPAFHMEKLKEMFPAFSKSCGEMVNKWEKMIPEEGRCEIDVWPDLQNMAADVISRTAFGSSYEEGEKIFQLLKEWAKLLMTYLTKGAYFIPGLRYMPTKLNKRMGEIDRKIRDMVWGIISKRQNAMKKGEGSNNEDLLGILLESNANQIEEQKNKKDVGMSIEEVISECRLFYFAGQETTAALLAWTMVLLGRYSEWQDRARAEVFEVFGDNKKWDFDGLSRLRVVTMILNEVLRLYPPVGMLAREIHKETKLGNVTLPVGVSIGIPILSIHHDPKIWGEDALEFKPERFSEGISKATKNQVCFIPFGWGPRICLGQNFALIEAKIALSMILQQFSFTLSPTYTHAPIANITIQPQHGAHLVLRKL 520
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 28251196 28255682 + CcPI632755_10g015060.1 Cco10g1506 190464
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1506 520 CDD CYP72 82 516 - -
Cco10g1506 520 Gene3D Cytochrome P450 27 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 Pfam Cytochrome P450 89 500 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 513 IPR050665 GO:0004497(PANTHER)
Cco10g1506 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco10g1506 520 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g1506 520 FunFam Cytochrome P450 734A1 28 520 - -
Cco10g1506 520 SUPERFAMILY Cytochrome P450 83 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1574 Cco-Chr3:30369716 Cco10g1506 Cco-Chr10:28251196 8.30E-140 dispersed
Cco05g2626 Cco-Chr5:34417115 Cco10g1506 Cco-Chr10:28251196 2.40E-110 dispersed
Cco05g2627 Cco-Chr5:34426823 Cco10g1506 Cco-Chr10:28251196 1.80E-105 dispersed
Cco06g0870 Cco-Chr6:10727201 Cco10g1506 Cco-Chr10:28251196 2.50E-09 dispersed
Cco07g0560 Cco-Chr7:7274832 Cco10g1506 Cco-Chr10:28251196 4.20E-78 dispersed
Cco10g1506 Cco-Chr10:28251196 Cco11g1763 Cco-Chr11:30369079 5.80E-189 dispersed
Cco10g1506 Cco-Chr10:28251196 Cco11g0302 Cco-Chr11:3027149 3.60E-106 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1506 - - - 0.0