Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1530 ATGCGTCCAATCTTGATGAAAGGCCATGAACGGCCATTAACTTTCCTCAAGTACAATAGGGATGGCGATCTTCTTTTCTCCTGCGCCAAGGATCACAACCCCACCGTCTGGTACGCCGACAACGGCGAGCGATTGGGAACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCTATGCGTCTTATCACTGGAAGTGCGGATCAGACGGCAAAATTGTGGAATGTACAAACTGGGCAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTCTCCGTCGGTGATAAGCTTGCGGTGATTACCACTGATCCTTTCATGGAGTTGCCTTCTGCTATTCATGTTAAACGCATTGCCAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTTGTTCTTAAGGGTCCCCAGGGAAGAATCAATAGAGCTGTTTGGGGGCCTCTAAATAAGACCATTATAAGTGCAGGAGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACAGGTAAACTTTTGAAAGAATCAGACAAGGAGACAGGCCATAAGAAAACAATAACCTCCCTTATGAAATCTTCTGATGGTTCACATTTTATTACTGGTTCTTTGGATAAGTCTGCAAAGCTGTGGGACACTAGAACATTGACGCTTATCAAGACGTATGTGACGGAACGGCCAGTCAATGCAGTTACGATGTCTCCACTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCGGCTGTGACAACAACTGATCATCGTGCAGGAAAGTTTGAAGCTAAATTTTTTGACAAGATCCTTCAAGAAGAGATTGGAGGCGTGAAAGGGCATTTTGGACCCATCAATGCTCTGGCTTTCAATCCCGATGGAAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA 981 45.06 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLVLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLMKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28526887 28530639 + CcPI632755_10g015300.1 Cco10g1530 190488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1530 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 323 - GO:0002183(PANTHER)|GO:0003723(PANTHER)|GO:0003743(PANTHER)|GO:0071541(PANTHER)
Cco10g1530 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515(InterPro)
Cco10g1530 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cco10g1530 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cco10g1530 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cco10g1530 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cco10g1530 326 CDD WD40 7 314 - -
Cco10g1530 326 SMART WD40_4 41 80 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SMART WD40_4 222 261 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SMART WD40_4 1 38 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SMART WD40_4 177 219 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SMART WD40_4 277 316 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 SMART WD40_4 135 174 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cco10g1530 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Cco10g1530 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Pfam WD domain, G-beta repeat 136 174 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Pfam WD domain, G-beta repeat 42 80 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Pfam WD domain, G-beta repeat 6 37 IPR001680 GO:0005515(InterPro)
Cco10g1530 326 Gene3D - 1 326 IPR015943 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0459 Cco-Chr5:3699198 Cco10g1530 Cco-Chr10:28526887 6.20E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1530 K03246 - csv:101211648 661.373