Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1533 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCGAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGAGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCACAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCATGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGTGTTTAAACCGACCTCTCCACTTCTTTGCTCCTCCATCGTCGCTCTCCCTCAATATCGCCGTCACGGCCGCCGCCGTGGAGCGCCTGCCAGATTTGAGAACCCAACAGGCGACATCTGAAGCTCTAGGAATGGACCCCAAGCACACAGGAGAGATTTTGAAGCATTTGGAGAAGCAGGATGAGTTTCTTATGGATGCTTATAGATCAATGTCCCATGAACTACATAAGCTTCAGGTAGAAGAAGAAATGCTCATGCGCAAGTTTTATGAAATAATGTCAGCTCATGGTCTAACAAAGAAGGGTGTGACTTTGACTTGTATTCCTGTTTTTGGTATGGTTCTTGTGGCAGAGGTGTTTGGCTTTGTCGATTTGTCCAATTCTCCTTCTATTAAGTTGACCCCCGACAACTCACTTTTCCTAAGATTAGTACTTAGACCAGAAGCTTTCTCAAATAATGAGATGAAAGGTTGGAGATTCTTGATTACTACTGATTCAAAGGAGGAGAAGACCAAGAGTGAAGATGATCGTAATAGTTCTGGCAGCGTTAGGAATGGCGATAACAACCTCTAA 1740 43.79 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVKLPEPCRRELHRIRLYDTVNTESIFFVVSELHEVPSQLYRPSMELTRNCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELCLNRPLHFFAPPSSLSLNIAVTAAAVERLPDLRTQQATSEALGMDPKHTGEILKHLEKQDEFLMDAYRSMSHELHKLQVEEEMLMRKFYEIMSAHGLTKKGVTLTCIPVFGMVLVAEVFGFVDLSNSPSIKLTPDNSLFLRLVLRPEAFSNNEMKGWRFLITTDSKEEKTKSEDDRNSSGSVRNGDNNL 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28543351 28554262 + CcPI632755_10g015330.1 Cco10g1533 190491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1533 579 SMART PTEN_C2_2 223 394 IPR014020 -
Cco10g1533 579 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Cco10g1533 579 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cco10g1533 579 Gene3D - 275 395 - -
Cco10g1533 579 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311(InterPro)
Cco10g1533 579 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cco10g1533 579 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cco10g1533 579 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cco10g1533 579 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 113 170 - -
Cco10g1533 579 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 394 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Cco10g1533 579 Pfam C2 domain of PTEN tumour-suppressor protein 314 392 IPR014020 -
Cco10g1533 579 MobiDBLite consensus disorder prediction 557 579 - -
Cco10g1533 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 393 IPR035892 -
Cco10g1533 579 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Cco10g1533 579 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1461 Cco-Chr4:30047214 Cco10g1533 Cco-Chr10:28543351 1.60E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1533 K01110 - csv:101212127 778.089