Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1533 | ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCGAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGAGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCACAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCATGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGTGTTTAAACCGACCTCTCCACTTCTTTGCTCCTCCATCGTCGCTCTCCCTCAATATCGCCGTCACGGCCGCCGCCGTGGAGCGCCTGCCAGATTTGAGAACCCAACAGGCGACATCTGAAGCTCTAGGAATGGACCCCAAGCACACAGGAGAGATTTTGAAGCATTTGGAGAAGCAGGATGAGTTTCTTATGGATGCTTATAGATCAATGTCCCATGAACTACATAAGCTTCAGGTAGAAGAAGAAATGCTCATGCGCAAGTTTTATGAAATAATGTCAGCTCATGGTCTAACAAAGAAGGGTGTGACTTTGACTTGTATTCCTGTTTTTGGTATGGTTCTTGTGGCAGAGGTGTTTGGCTTTGTCGATTTGTCCAATTCTCCTTCTATTAAGTTGACCCCCGACAACTCACTTTTCCTAAGATTAGTACTTAGACCAGAAGCTTTCTCAAATAATGAGATGAAAGGTTGGAGATTCTTGATTACTACTGATTCAAAGGAGGAGAAGACCAAGAGTGAAGATGATCGTAATAGTTCTGGCAGCGTTAGGAATGGCGATAACAACCTCTAA | 1740 | 43.79 | MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVKLPEPCRRELHRIRLYDTVNTESIFFVVSELHEVPSQLYRPSMELTRNCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELCLNRPLHFFAPPSSLSLNIAVTAAAVERLPDLRTQQATSEALGMDPKHTGEILKHLEKQDEFLMDAYRSMSHELHKLQVEEEMLMRKFYEIMSAHGLTKKGVTLTCIPVFGMVLVAEVFGFVDLSNSPSIKLTPDNSLFLRLVLRPEAFSNNEMKGWRFLITTDSKEEKTKSEDDRNSSGSVRNGDNNL | 579 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28543351 | 28554262 | + | CcPI632755_10g015330.1 | Cco10g1533 | 190491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1533 | 579 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - | |
Cco10g1533 | 579 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN | 28 | 210 | - | - | |
Cco10g1533 | 579 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
Cco10g1533 | 579 | Gene3D | - | 275 | 395 | - | - | |
Cco10g1533 | 579 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311(InterPro) | |
Cco10g1533 | 579 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
Cco10g1533 | 579 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 207 | IPR029021 | - | |
Cco10g1533 | 579 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
Cco10g1533 | 579 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 113 | 170 | - | - | |
Cco10g1533 | 579 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 30 | 394 | IPR051281 | GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER) | |
Cco10g1533 | 579 | Pfam | C2 domain of PTEN tumour-suppressor protein | 314 | 392 | IPR014020 | - | |
Cco10g1533 | 579 | MobiDBLite | consensus disorder prediction | 557 | 579 | - | - | |
Cco10g1533 | 579 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 292 | 393 | IPR035892 | - | |
Cco10g1533 | 579 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311(InterPro) | |
Cco10g1533 | 579 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1461 | Cco-Chr4:30047214 | Cco10g1533 | Cco-Chr10:28543351 | 1.60E-39 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1533 | K01110 | - | csv:101212127 | 778.089 |