Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1539 ATGGAGATTCTGAGAAGAAGGGTCGACGGCAGTGTGCTTCTGGTGGCGGCCGCTCTGGTGGTACTGCTGGCGGTGGTGCCGGAAGTATCAGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGACTACCAATGTGAACTACACTATCTGGGCTCAGGGAAAGCACTTCTATTATGATGACTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCAATTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTGACCAGGCCTTATTACTTCATAAGTGGCAAGGGCTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCGGCCTCACCCTTGAACGAAAAGAGCAGTGCTCTCAGATCTACCTACATTGGCCACACCCCATTCGTTTTAACCGCTGTTTTCGCCATTGCTGCTCTGTACGAAGCTTTCGCCCAGGTCTGGTAG 537 50.65 MEILRRRVDGSVLLVAAALVVLLAVVPEVSATRWTVGGNMGWTTNVNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCNSDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSASPLNEKSSALRSTYIGHTPFVLTAVFAIAALYEAFAQVW 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28620443 28621785 + CcPI632755_10g015390.1 Cco10g1539 190497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1539 178 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055(InterPro)
Cco10g1539 178 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055(InterPro)
Cco10g1539 178 SUPERFAMILY Cupredoxins 31 130 IPR008972 -
Cco10g1539 178 FunFam Lamin-like protein 30 133 - -
Cco10g1539 178 PANTHER BLUE COPPER PROTEIN 21 135 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco10g1539 178 Gene3D - 30 133 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1539 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1592 . . . Bda13g01701 . Bpe14g00163 . . Cmo14g00570 Cmo11g01202 . . Car11g00977 . . Cpe03g00492 . . . . . . . . Cla10g01478 Cam10g1523 Cec10g1561 Cco10g1539 Clacu10g1536 Cmu10g2300 Cre10g1683 . . . . . . . . Blo17g00374 . . . . . Bma01g01054 Bma02g00433 . . . . . . . Cpe04g00183 . . . . . . . . . . . . . . . . Csa03g03792 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco02g2423 . 45 263 Phytocyanin Superfamily AT1G08500 56.8 5.7e-64 241.1
Cco03g1459 . 29 140 Phytocyanin Superfamily AT2G27035 58.9 4.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38