Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1561 ATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCGGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGGGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTCGCACTAGACACAGGTGTCAGTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTTTGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGATCGGCCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTATGTGAAAATTTTATGGAGAATAAAGACCATGGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTCTAGGCATATTTTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATCGTTGGTGGAACACCAACGGAGTCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAGGTATATTGATTCCAATGGAGAATCTATCGATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGAGGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACATTGGTTAACAATTTGCGAAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACGAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGTGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTGCTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATCGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATTATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTCAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA 3108 42.02 MNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVSEKDTSKRQEIYGYNRYTEKPSRPFWVFVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCENFMENKDHGSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDRYIDSNGESIDLTEEKVNNATNVINSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVVRWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA 1035
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 28801858 28816876 - CcPI632755_10g015610.1 Cco10g1561 190519
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1561 1035 Coils Coil 601 621 - -
Cco10g1561 1035 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Cco10g1561 1035 Pfam Cation transporter/ATPase, N-terminus 118 184 IPR004014 -
Cco10g1561 1035 Gene3D - 462 657 IPR023299 GO:0000166(InterPro)
Cco10g1561 1035 NCBIfam HAD-IC family P-type ATPase 204 479 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 NCBIfam HAD-IC family P-type ATPase 550 697 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 NCBIfam HAD-IC family P-type ATPase 718 840 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 FunFam Calcium-transporting ATPase 769 1015 - -
Cco10g1561 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 51 IPR024750 GO:0005516(InterPro)
Cco10g1561 1035 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Cco10g1561 1035 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Cco10g1561 1035 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1014 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cco10g1561 1035 FunFam Calcium-transporting ATPase 214 335 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cco10g1561 1035 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cco10g1561 1035 Gene3D - 18 79 - -
Cco10g1561 1035 FunFam Calcium-transporting ATPase 18 78 - -
Cco10g1561 1035 PANTHER CATION TRANSPORTING ATPASE 78 1013 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cco10g1561 1035 Pfam haloacid dehalogenase-like hydrolase 644 764 - -
Cco10g1561 1035 SFLD C1.7: P-type atpase like 434 804 - -
Cco10g1561 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cco10g1561 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166(InterPro)
Cco10g1561 1035 Gene3D - 134 335 - -
Cco10g1561 1035 Pfam Cation transport ATPase (P-type) 508 592 - -
Cco10g1561 1035 CDD P-type_ATPase_Ca_PMCA-like 142 885 - -
Cco10g1561 1035 Gene3D - 167 1011 - -
Cco10g1561 1035 Gene3D - 449 797 IPR023214 -
Cco10g1561 1035 FunFam Calcium-transporting ATPase 650 797 - -
Cco10g1561 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Cco10g1561 1035 FunFam Calcium-transporting ATPase 462 657 - -
Cco10g1561 1035 Pfam E1-E2 ATPase 235 430 - -
Cco10g1561 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco10g1561 1035 SFLD p-type atpase 434 804 IPR044492 -
Cco10g1561 1035 SUPERFAMILY HAD-like 451 857 IPR036412 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0854 Cco-Chr1:9091181 Cco10g1561 Cco-Chr10:28801858 0.00E+00 dispersed
Cco04g1518 Cco-Chr4:30587493 Cco10g1561 Cco-Chr10:28801858 0.00E+00 dispersed
Cco09g0712 Cco-Chr9:6483548 Cco10g1561 Cco-Chr10:28801858 1.10E-236 dispersed
Cco10g1561 Cco-Chr10:28801858 Cco11g1185 Cco-Chr11:23152968 3.10E-266 dispersed
Cco10g1561 Cco-Chr10:28801858 Cco05g2319 Cco-Chr5:31780376 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1561 K01537 - csv:101206199 1879.37