Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1566 ATGGAAGAGGCAATAGTAGGCTTAGGTAATGTGTGTGAGAACTACGTCGGCGCCACCCGAAAGCCGACTCCGCCACCGTTCTTGGCCAAAACCTACATGCTTGTTGAGGATCCGACGACAGACGACGTCATATCGTGGAACTCTGATGGAACAGCGTTCGTCGTGTGGCGGCCGCAGGAGTTTGCAACAGATCTCCTCCCCACCCTCTTCAAACATAACAACTTCTCTAGCTTTGTTCGCCAACTTAACACATATGGATTTCGCAAGATTGCAACAAGCAGATGGGAGTTTTGCAATGACAAGTTTCAAAAGGGATGTAAAGAAAGACTATGCGAAATACGAAGGAGAAAAGCATGGAGCAACAAACGACAACATAATAGTAATGCAAAAGTAATCCAAGCCACACATCAAGACGATCGTGATGAAGATCAACGGTCGTCGTCAACTACGTCGTCATTTGATGATCAATACATGATGCTTGTTGACGAAAACAAGAGGTTGAAGAAGGAGAATGGAGTGTTGAGCTTTGAGCTAACGAACATGAAGAAGAAATGCAGAGAGCTTCTTGATTTGGTGGCTAAGTACGAATTCGCTGTTATTAATGGCGACGAAAAGAAGGAAGATGAGATGAAGCCAAACTTGAAACTGTTTGGAGTCAAGTTGGAGATTGAGGAAGAAGATGAAATGGTGATCAGGCAAAACAAGAGGAAGAGATCAATTTATCAAAATAAATCTTTTCTACTCTTACAATCAAGCAAATGA 762 43.04 MEEAIVGLGNVCENYVGATRKPTPPPFLAKTYMLVEDPTTDDVISWNSDGTAFVVWRPQEFATDLLPTLFKHNNFSSFVRQLNTYGFRKIATSRWEFCNDKFQKGCKERLCEIRRRKAWSNKRQHNSNAKVIQATHQDDRDEDQRSSSTTSSFDDQYMMLVDENKRLKKENGVLSFELTNMKKKCRELLDLVAKYEFAVINGDEKKEDEMKPNLKLFGVKLEIEEEDEMVIRQNKRKRSIYQNKSFLLLQSSK 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28871412 28873640 + CcPI632755_10g015660.1 Cco10g1566 190524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1566 253 MobiDBLite consensus disorder prediction 134 148 - -
Cco10g1566 253 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1566 253 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1566 253 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1566 253 SUPERFAMILY Winged helix DNA-binding domain 23 116 IPR036390 -
Cco10g1566 253 Gene3D - 19 117 IPR036388 -
Cco10g1566 253 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 196 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco10g1566 253 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1566 253 FunFam Heat stress transcription factor B-4 19 117 - -
Cco10g1566 253 SMART hsfneu3 23 116 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1566 253 MobiDBLite consensus disorder prediction 122 151 - -
Cco10g1566 253 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1566 K09419 - - csv:101216546 380.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0481 Cco-Chr4:15374116 Cco10g1566 Cco-Chr10:28871412 4.30E-62 dispersed
Cco10g1566 Cco-Chr10:28871412 Cco10g1925 Cco-Chr10:32842805 1.70E-29 dispersed
Cco10g1566 Cco-Chr10:28871412 Cco08g1787 Cco-Chr8:29004577 4.30E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1462 . Blo12g00576 . . . . . . . . Cma03g00056 . Car03g00046 . Sed02g0844 Cpe10g01200 . Bhi03g02582 Tan03g0376 Cmetu04g0111 . Hepe04g0401 . . Cla04g00354 Cam04g0366 Cec04g0460 Cco04g0481 Clacu04g0365 Cmu04g0415 Cre04g0452 Cone3ag0046 Cone10ag0035 . . . . . Cme04g02057 . . . . . . . . . Cmo03g00056 . . . . . . . Bhi11g02893 . . . . . . Cla10g01503 Cam10g1552 Cec10g1593 Cco10g1566 Clacu10g1561 Cmu10g2324 Cre10g1708 Lsi03g01558 Csa03g03764 Chy04g01608 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003188 2 2 1 0 0 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 2 2 2 3 1 1 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60131 PF00447 HSF_DNA-bind 9.50E-32 CL0123 Cco TF