Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1567 ATGGCTTCTTCGTCCTCTGATCCTGGTTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAGTGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGGGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTATGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTCGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGACAGATCATGGGAAAGTGGTCGAAACACAAACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAACACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTTGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCTGAGGTTACAAAAACTGAAACTGATTATCCAGTTATCAATATCAAGATCTCGCTGCTGTTTCCCACTTTGCTTGTTGGATTAAGACGAGTTGGAAGGATAGGAATGGCTGGAAGCTTGCGTTTGGATGACATTGTCCTGCTGTATGTACCCCCAGAAGAGAAGGACCAACAGAACCATGAGCCAAGGTTAACCATGGCCGAAGTCGAGCCCCCTCAAGAGAGGGTCCAACAATCCAAGTGA 1482 45.95 MASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRMPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKTDHGKVVETQTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTTPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAEVTKTETDYPVINIKISLLFPTLLVGLRRVGRIGMAGSLRLDDIVLLYVPPEEKDQQNHEPRLTMAEVEPPQERVQQSK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28876204 28882052 - CcPI632755_10g015670.1 Cco10g1567 190525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1567 493 MobiDBLite consensus disorder prediction 1 31 - -
Cco10g1567 493 Pfam AP2 domain 76 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 ProSiteProfiles AP2/ERF domain profile. 75 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 Coils Coil 307 335 - -
Cco10g1567 493 MobiDBLite consensus disorder prediction 238 258 - -
Cco10g1567 493 SUPERFAMILY DNA-binding domain 74 142 IPR016177 GO:0003677(InterPro)
Cco10g1567 493 Gene3D AP2/ERF domain 75 143 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 SMART rav1_2 75 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1567 493 MobiDBLite consensus disorder prediction 468 493 - -
Cco10g1567 493 FunFam AP2-like ethylene-responsive transcription factor 74 143 - -
Cco10g1567 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1567 Cco-Chr10:28876204 Cco11g0916 Cco-Chr11:13224340 7.50E-45 dispersed
Cco10g1567 Cco-Chr10:28876204 Cco05g2472 Cco-Chr5:33153523 3.00E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60132 PF00847 AP2 4.20E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1567 K09285 - csv:101206434 743.421