Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1573 ATGGCCGACGCCGACCAATTCCCTCGCTGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAGACCCTGACTCCGCCACTGCCACCGTCACCGCCCCGGCTCCTTGTGGCGCATGCAAGTTTCTCCGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTCGCTTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGTCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAACTCGGAGCGTTGCAGCCAGCTTATTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTATGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 52.73 MADADQFPRWKPLGNKRASAANRDPDSATATVTAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELVAVQAQLISSRLAFAAAIQNSQPSQLGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28943397 28945579 - CcPI632755_10g015730.1 Cco10g1573 190531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1573 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cco10g1573 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cco10g1573 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Cco10g1573 231 Coils Coil 117 137 - -
Cco10g1573 231 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0780 Cco-Chr9:7184727 Cco10g1573 Cco-Chr10:28943397 2.60E-35 dispersed
Cco10g1573 Cco-Chr10:28943397 Cco11g1139 Cco-Chr11:22185943 1.70E-23 dispersed
Cco10g1573 Cco-Chr10:28943397 Cco06g0035 Cco-Chr6:348355 1.60E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60134 PF03195 LOB 2.30E-37 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1573 - - - 0.0