Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1579 ATGGCGACACAGAAATCAACACCGCAAACTGTTCCGCATATGGATAAAACAGTGGGTTGTGTTTTTTTGGCGAATCGGTTTCAGTCTCCAGAATTCCATTTCCATGTTATTAACAAAAGCTCGAGAAGAATCCACGGCAACCCTCAGGAAGATTGCCAGAGTTTTCTTCGTTTAACTGAGTTTGAAGCTAAGTGCTATGTTCTTAAATCCAACAACCCCTGTAACACCCAAGGATACATAGATTATCTTTACATTTTCTATTGTCAGTATGGAAGTTTTAGCATCCTGGGCTACACTCTGTTGTTTCTGTGGCTTCTTGTGTTGTTCTATCTTTTGGGTAACACTGCTTCTGAATACTTTTGCTCTTCCCTCGAGAGCTTGTCAAAATTGTTGAATCTGTCCCCAACAATTGCTGGTGTTACTCTGCTTTCTCTTGGCAATGGGGCACCTGATGTTTTTGCCAGCCTTGTTGCTTTCATGGGGGATGGAACTAGTGATATTGGCTTGAATACTGTTCTCGGCGGAGCCTCGTTTGTTACCTGCGTCGTCGTTGGAATCATTAGCATTTTGCTGCGTCGGCAATGGATTAAGGTGAATAGGTCTGCCTTCATTCGAGATGTTTTGTTCTTCCTCTTGGTTCTTTTGTCTGTTTTCCTGATATTGCTTCATGGTCATATCAATCTGTGGGGTTCCATTGGCTTTTCTTCCATGTATATTATTTATGTTTTGGTTGTTTATGTCTCCCACGCCCAATGGTTGAGTTTTAGAAGTGAAATCTGTGAACCCCTTTTGAAAGAACCACCAAAGGATGAGTTTGAGGGTCAAAATGAACCACGGGACAACGGTGACGATGATGACAACAATGATGATGTTAGAATTGATGTATATGATCTCTGTTTTTGTCCAAGATTATCACCTTCTTGTCTTTTTTTCCTTCGGATTCTTGAGATTCCTCTTTACTTGCCTAGAAGATTGACAATTCCAGCCATTGCTGAAGAAAACTGGTCTAGACCATTTGCAGTTGCTTCAGTGACATTGGCCCCCCTTCTCTTATCTCTTCTATGGACATTTCACGACCAGAGTGATCAACCTTCGCAATCGAACCTTATCATCTGTGTCATCGCTTTGTTGCTTGGAGTTAGTTTCGGAATTGTTGCATTTGCGACGACTGAGAATTCAAGCCCACCAAAGAAGTACCTGTTCCCTTGGCTTGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTACATTGTAGCTCAGGAACTGGTAGGCCTATTAGTTTCACTTGGCTACATAATGGGTATAAGCCCTTCAATCCTAGGACTTACCTTCCTTGCTTGGGGAAACTCTCTAGGGGATTTGGTTACCAATGTGACCATGGCTTTGAACGGCGGGCAGCGAGGCGCCCAAATCGCCATCTCCGGTTGCTACGCTGGCCCCATCTTCAACACTCTGTTCGGCCTTGGGATATCTCTTGTTGGTGCTTCGTGGAAGAAGTATCCGCAGCCGGTCGCCATCCCTCCCGACCCTTATGTCATGGAGACATTGGGGCTGTTGGTAGGAGGGTTGCTTTGGGCACTTGTGGCTTTGCCAAGGAGAGAGATGAGGCTTGATGCTGTCTTGGGAGGAGGCCTTCTGGCTATCTATTTAACCTCTTTGCTCTTAAGGCTTTTGCAAGCTTTTGGTTCTTCCCATTAG 1698 44.58 MATQKSTPQTVPHMDKTVGCVFLANRFQSPEFHFHVINKSSRRIHGNPQEDCQSFLRLTEFEAKCYVLKSNNPCNTQGYIDYLYIFYCQYGSFSILGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKLLNLSPTIAGVTLLSLGNGAPDVFASLVAFMGDGTSDIGLNTVLGGASFVTCVVVGIISILLRRQWIKVNRSAFIRDVLFFLLVLLSVFLILLHGHINLWGSIGFSSMYIIYVLVVYVSHAQWLSFRSEICEPLLKEPPKDEFEGQNEPRDNGDDDDNNDDVRIDVYDLCFCPRLSPSCLFFLRILEIPLYLPRRLTIPAIAEENWSRPFAVASVTLAPLLLSLLWTFHDQSDQPSQSNLIICVIALLLGVSFGIVAFATTENSSPPKKYLFPWLAAGFTMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVTNVTMALNGGQRGAQIAISGCYAGPIFNTLFGLGISLVGASWKKYPQPVAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFGSSH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29000475 29002572 - CcPI632755_10g015790.1 Cco10g1579 190537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1579 565 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 39 563 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
Cco10g1579 565 Gene3D - 133 259 IPR044880 -
Cco10g1579 565 Gene3D - 339 557 IPR044880 -
Cco10g1579 565 MobiDBLite consensus disorder prediction 266 288 - -
Cco10g1579 565 Pfam Sodium/calcium exchanger protein 404 557 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1579 565 Pfam Sodium/calcium exchanger protein 102 246 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1552 Cco-Chr3:30177801 Cco10g1579 Cco-Chr10:29000475 1.40E-112 dispersed
Cco03g1752 Cco-Chr3:32239564 Cco10g1579 Cco-Chr10:29000475 7.20E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1579 K13754 - csv:101204766 924.85