Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1598 | ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTTAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCGCTTAGGAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAAAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAAGAGTTTGAGTTTGAGATGAAGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGGCGGAGAGAAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA | 672 | 42.56 | MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEKTTATEIELESVEKEEEEEFEFEMKSKKRKGGVDEESVEAERRRRRRFDNNGVATVI | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29261022 | 29262291 | - | CcPI632755_10g015980.1 | Cco10g1598 | 190556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1598 | 223 | CDD | REC_typeA_ARR | 11 | 148 | - | - | |
Cco10g1598 | 223 | MobiDBLite | consensus disorder prediction | 186 | 216 | - | - | |
Cco10g1598 | 223 | Coils | Coil | 161 | 181 | - | - | |
Cco10g1598 | 223 | Pfam | Response regulator receiver domain | 74 | 142 | IPR001789 | GO:0000160(InterPro) | |
Cco10g1598 | 223 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 196 | IPR045279 | GO:0009736(InterPro) | |
Cco10g1598 | 223 | SMART | REC_2 | 9 | 148 | IPR001789 | GO:0000160(InterPro) | |
Cco10g1598 | 223 | MobiDBLite | consensus disorder prediction | 177 | 223 | - | - | |
Cco10g1598 | 223 | SUPERFAMILY | CheY-like | 8 | 163 | IPR011006 | - | |
Cco10g1598 | 223 | ProSiteProfiles | Response regulatory domain profile. | 10 | 153 | IPR001789 | GO:0000160(InterPro) | |
Cco10g1598 | 223 | Gene3D | - | 10 | 221 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0576 | Cco-Chr4:18812233 | Cco10g1598 | Cco-Chr10:29261022 | 5.60E-55 | dispersed | |
Cco05g2946 | Cco-Chr5:36923275 | Cco10g1598 | Cco-Chr10:29261022 | 1.30E-50 | dispersed | |
Cco06g1869 | Cco-Chr6:28929583 | Cco10g1598 | Cco-Chr10:29261022 | 6.30E-39 | dispersed | |
Cco07g0539 | Cco-Chr7:6919100 | Cco10g1598 | Cco-Chr10:29261022 | 3.80E-40 | dispersed | |
Cco08g0714 | Cco-Chr8:18714733 | Cco10g1598 | Cco-Chr10:29261022 | 1.40E-38 | dispersed | |
Cco10g1598 | Cco-Chr10:29261022 | Cco05g2760 | Cco-Chr5:35446651 | 4.30E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60137 | PF00072 | Response_reg | 2.50E-13 | CL0304 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1598 | K14492 | - | csv:101220810 | 329.331 |