Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1598 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTTAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCGCTTAGGAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAAAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAAGAGTTTGAGTTTGAGATGAAGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGGCGGAGAGAAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 672 42.56 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEKTTATEIELESVEKEEEEEFEFEMKSKKRKGGVDEESVEAERRRRRRFDNNGVATVI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29261022 29262291 - CcPI632755_10g015980.1 Cco10g1598 190556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1598 223 CDD REC_typeA_ARR 11 148 - -
Cco10g1598 223 MobiDBLite consensus disorder prediction 186 216 - -
Cco10g1598 223 Coils Coil 161 181 - -
Cco10g1598 223 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Cco10g1598 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 196 IPR045279 GO:0009736(InterPro)
Cco10g1598 223 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cco10g1598 223 MobiDBLite consensus disorder prediction 177 223 - -
Cco10g1598 223 SUPERFAMILY CheY-like 8 163 IPR011006 -
Cco10g1598 223 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
Cco10g1598 223 Gene3D - 10 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0576 Cco-Chr4:18812233 Cco10g1598 Cco-Chr10:29261022 5.60E-55 dispersed
Cco05g2946 Cco-Chr5:36923275 Cco10g1598 Cco-Chr10:29261022 1.30E-50 dispersed
Cco06g1869 Cco-Chr6:28929583 Cco10g1598 Cco-Chr10:29261022 6.30E-39 dispersed
Cco07g0539 Cco-Chr7:6919100 Cco10g1598 Cco-Chr10:29261022 3.80E-40 dispersed
Cco08g0714 Cco-Chr8:18714733 Cco10g1598 Cco-Chr10:29261022 1.40E-38 dispersed
Cco10g1598 Cco-Chr10:29261022 Cco05g2760 Cco-Chr5:35446651 4.30E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60137 PF00072 Response_reg 2.50E-13 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1598 K14492 - csv:101220810 329.331