Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1614 ATGAGGAAAGAGGGAGGGTTTATGAAGAAAATGGGAAAGTCAATATGGTTCAAAGTTTTGGTGGGTTTTGTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCGAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCGTCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTAACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGACGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1524 44.42 MRKEGGFMKKMGKSIWFKVLVGFVGFELIDELEAGELIAEVLITVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFNIEDVDLTRNPLYNQIKSSSSTLNNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29507372 29516126 + CcPI632755_10g016140.1 Cco10g1614 190572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1614 507 PANTHER TRANSCRIPTION FACTOR TGA9 180 507 - -
Cco10g1614 507 CDD bZIP_HBP1b-like 222 273 - -
Cco10g1614 507 MobiDBLite consensus disorder prediction 149 183 - -
Cco10g1614 507 Pfam Seed dormancy control 305 379 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco10g1614 507 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1614 507 Coils Coil 241 268 - -
Cco10g1614 507 Pfam bZIP transcription factor 221 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1614 507 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1614 507 MobiDBLite consensus disorder prediction 184 199 - -
Cco10g1614 507 ProSiteProfiles DOG1 domain profile. 287 504 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco10g1614 507 SUPERFAMILY Leucine zipper domain 222 265 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1614 507 Gene3D - 221 273 - -
Cco10g1614 507 FunFam BZIP family transcription factor 221 270 - -
Cco10g1614 507 SMART brlzneu 218 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1614 507 MobiDBLite consensus disorder prediction 149 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0650 Cco-Chr8:17230048 Cco10g1614 Cco-Chr10:29507372 2.00E-119 dispersed
Cco08g1226 Cco-Chr8:23976270 Cco10g1614 Cco-Chr10:29507372 2.20E-133 dispersed
Cco10g1614 Cco-Chr10:29507372 Cco10g1716 Cco-Chr10:30698412 1.30E-87 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60138 PF14144 DOG1 9.30E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1614 K14431 - csv:101219149 848.195