Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1617 ATGTGGGCTCTTCGTAGAGCTTCTACTCCTCTTAGGAATCGAGGGTACAGAGTAAGAACTTCATATGTCTTTGGCAAACTAGAGGTACCATATTCTTGGGAAGGAAATGTAGCTGGTTTCGGAACCACCGCTGCTTTATCTGATAGATGCATTTTTTTTGAGGGAAACAACCTTGCAACATGGCCGTCCTCTTGTATTTATATTAGTAGTCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGAGGAAGATAACATGGAAGATGGATTTTCTGAACTTGATGAAACACTTCCACGCACTAGTCCACTCGAAGATAGTAAGGCAACTGATGATAATAAAGAGGAACTAACCTCTGGATCAGAAATTGATGACGACGACGACGACATTGATGATGGGACACAAAATGAACTGGATTTACCTGAGGTAGAAACTGAACTTGCTGAAAAGATATCAACAAAAAGGGCTTCTTCAGAGCTGTTCCATGCTATTAATGGTGCTCCAGGTTTATCTGTTCCTATTGTACTTGATAAGTGGGTCAGTGAAGGAAAAGAAATAAGCCGGGCTGTTGTCTCTCTTGCCATGCTCAATCTTCGTAGACGTCGAATGTTTGGGAAGGCTTTGCAGTTTTCGGAGTGGTTGGAAGCAAGCGGGCAATTCGATTCTATTGAGAGAGATTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACACGGTCTCCATAAGGCAGAGAGGTACATTGCTAAAATCCCAAAGTCCTTCCAGGGGGAGGTGATATACCGAACTCTTTTGGCTAACTGTGTGATAGCCAACAATGTAAAAAAAGCAGAGGAAGTATTTAACAAAATGAAGGACCTCGGATTCCCACTCACAACATTTGCTTGCAACCAGTTGCTTCTTCTTCACAAGAGGCTTGACAAGAGGAAAATGGCCGATGTTTTGTTGTTGATGGAGAAAGAAAATATCAAGCCTTCTCTATTTACTTACAAAATCTTAATAGATGCTAAAGGCCTATCAAATGACATGCTAGGGATGGAACAAGTTGTCGATACAATGAAGGCCGAAGGAGTTGAAATTGATGTCAGTGTACTTTCCATATTAGCTAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCAAGGCCATTTTAAAGGAGATGGAAGATGTTAACTCCAAAGGTTCTCAATGGCCTTGCAGAATTTTACTTCCCCTTTATGGAGAACTCCAAATGGAAGAGGAAGTGAGGAGGCTCTGGAAGATCTGCGAGTCAAATCCTCGTATCGAAGAATGCATGGCTGCCATTGTTGCTTGGGGAAAGCTGAAGAACGTCCCGGAAGCAGAGAAAATTTTTGATAGAGTTGTAAAAACATGGAAGAAGCTGTCCCCAAAACAATATTCTACCATGTTGAACGTTTATGCAGATAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCAGCATTGGTCCGTTATCATGGGATGCAATTGTGAAGCTCTATGTGGAAGCTGGGGAGGTAGAAAAAGCAGACTCTTTCTTGGTTAAGGCTGTTCAAAAAAGCCAGAAGAAGCCATTGTTTACCTCATACATGGTTATCATGGATCACTATGCAAGAAGGGGGGATGTCCACAATGCAGAGAAAATCTTTCACAATATGAGACTATGGGGTTACGTGGCTCGATTGAGGCAATTTCAAACTCTAATACAGGCATATGTTAACGCGAAGACTCCGGCCTATGGTATGAGAGAGAGAATGAAGGCAGATAATGTATTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAGTTGATGCTTTAAGGAAGACAGCAGTGTCGGATTTGCTTGGCTGA 1878 42.55 MWALRRASTPLRNRGYRVRTSYVFGKLEVPYSWEGNVAGFGTTAALSDRCIFFEGNNLATWPSSCIYISSHGLSSQAGAENSGEEDNMEDGFSELDETLPRTSPLEDSKATDDNKEELTSGSEIDDDDDDIDDGTQNELDLPEVETELAEKISTKRASSELFHAINGAPGLSVPIVLDKWVSEGKEISRAVVSLAMLNLRRRRMFGKALQFSEWLEASGQFDSIERDYASRLDLIAKVHGLHKAERYIAKIPKSFQGEVIYRTLLANCVIANNVKKAEEVFNKMKDLGFPLTTFACNQLLLLHKRLDKRKMADVLLLMEKENIKPSLFTYKILIDAKGLSNDMLGMEQVVDTMKAEGVEIDVSVLSILAKHYASGGLKDKAKAILKEMEDVNSKGSQWPCRILLPLYGELQMEEEVRRLWKICESNPRIEECMAAIVAWGKLKNVPEAEKIFDRVVKTWKKLSPKQYSTMLNVYADNKMLTKGKDLVKQMADSGCSIGPLSWDAIVKLYVEAGEVEKADSFLVKAVQKSQKKPLFTSYMVIMDHYARRGDVHNAEKIFHNMRLWGYVARLRQFQTLIQAYVNAKTPAYGMRERMKADNVFPNKALAGKLAQVDALRKTAVSDLLG 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29540879 29544124 - CcPI632755_10g016170.1 Cco10g1617 190575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1617 625 MobiDBLite consensus disorder prediction 94 118 - -
Cco10g1617 625 PANTHER OS12G0527900 PROTEIN 70 613 - GO:0005739(PANTHER)
Cco10g1617 625 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Cco10g1617 625 NCBIfam pentatricopeptide repeat 467 497 IPR002885 -
Cco10g1617 625 NCBIfam pentatricopeptide repeat 537 567 IPR002885 -
Cco10g1617 625 Gene3D Tetratricopeptide repeat domain 433 621 IPR011990 GO:0005515(InterPro)
Cco10g1617 625 Gene3D Tetratricopeptide repeat domain 223 432 IPR011990 GO:0005515(InterPro)
Cco10g1617 625 Pfam Pentatricopeptide repeat domain 284 336 IPR002885 -
Cco10g1617 625 Pfam PPR repeat 537 565 IPR002885 -
Cco10g1617 625 Pfam PPR repeat 467 495 IPR002885 -
Cco10g1617 625 MobiDBLite consensus disorder prediction 75 141 - -
Cco10g1617 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cco10g1617 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Cco10g1617 625 MobiDBLite consensus disorder prediction 119 140 - -
Cco10g1617 625 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 432 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1615 Cco-Chr10:29517775 Cco10g1617 Cco-Chr10:29540879 0.00E+00 dispersed
Cco10g1616 Cco-Chr10:29535461 Cco10g1617 Cco-Chr10:29540879 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1100 . . . . . Bpe03g01266 Bma04g01612 . Cmo06g00021 . . . . . . . Cpe08g01068 . . . . . . . . . . . . . . . . . . . . . Cme04g02112 Blo07g01376 . . . . . . . Sed02g0799 . . Cma06g00024 . Car06g00359 . . . Bhi11g02799 Tan08g1266 Cmetu04g1536 . . . . Cla10g01554 Cam10g1603 Cec10g1650 Cco10g1617 Clacu10g1617 Cmu10g2373 Cre10g1753 Lsi03g01618 Csa03g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000787 3 5 1 4 3 3 0 3 3 5 2 3 5 1 5 4 3 2 3 3 5 2 2 3 2 3 2 8 3 1 92