Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1622 | ATGGGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTATAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCGCACTTGGCTGATTTTGGTCTAGCAACACATCGGAAATATCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGTTGGGACACTCATTTATATGGCCCCCGAGATATTGAGGAAGGAAATACATACAGACCTATCAGACGTCTATAGTTTTGGCATCCTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACGGATCTTCGTACTGAAGCACAGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTGCGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGATTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCGTCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAAGGGTCCAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGACGCTAATGAACATGATTACGTGTATCAAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATCATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACAGCCCAACACTTTCTTACGGATCCTACTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCGTTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTGGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTATGTCAGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTTGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGTGACGATGATCTGAAGCCAGCCGTCACTGCAGAACCCGAGATAATGGAAACTGTTTTGACATCACAGGACGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCAACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAATTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA | 1968 | 43.8 | MGLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELAKALQYLHNLGIVHRDVKPANVLLDKDLHPHLADFGLATHRKYLKEISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLAAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRKGPESVTPIQPDLCGRLSDANEHDYVYQEDINWSNQGEHCSQKSSDADRCALNEWFDFSTDHSAYSPTLSYGSYSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCQAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEIMETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29583316 | 29594092 | - | CcPI632755_10g016220.1 | Cco10g1622 | 190580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1622 | 655 | PANTHER | PROTEIN PHOSPHATASE | 357 | 644 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco10g1622 | 655 | Pfam | Protein phosphatase 2C | 389 | 638 | IPR001932 | - | |
Cco10g1622 | 655 | Pfam | Protein kinase domain | 33 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1622 | 655 | ProSiteProfiles | Protein kinase domain profile. | 30 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1622 | 655 | SMART | serkin_6 | 30 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1622 | 655 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1622 | 655 | ProSiteProfiles | PPM-type phosphatase domain profile. | 388 | 645 | IPR001932 | - | |
Cco10g1622 | 655 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 379 | 649 | - | - | |
Cco10g1622 | 655 | Gene3D | - | 378 | 650 | IPR036457 | - | |
Cco10g1622 | 655 | SMART | PP2C_SIG_2 | 403 | 645 | IPR001932 | - | |
Cco10g1622 | 655 | SMART | PP2C_4 | 378 | 643 | IPR001932 | - | |
Cco10g1622 | 655 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 329 | - | - | |
Cco10g1622 | 655 | SUPERFAMILY | PP2C-like | 380 | 647 | IPR036457 | - | |
Cco10g1622 | 655 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 332 | IPR011009 | - | |
Cco10g1622 | 655 | CDD | PP2Cc | 388 | 645 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1622 | Cco-Chr10:29583316 | Cco11g1147 | Cco-Chr11:22402226 | 8.20E-31 | dispersed | |
Cco10g1622 | Cco-Chr10:29583316 | Cco04g2089 | Cco-Chr4:34819877 | 2.90E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87168 | PF00069 | Pkinase | 1.20E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1622 | - | - | - | 0.0 |