Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1622 ATGGGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTATAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCGCACTTGGCTGATTTTGGTCTAGCAACACATCGGAAATATCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGTTGGGACACTCATTTATATGGCCCCCGAGATATTGAGGAAGGAAATACATACAGACCTATCAGACGTCTATAGTTTTGGCATCCTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACGGATCTTCGTACTGAAGCACAGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTGCGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGATTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCGTCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAAGGGTCCAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGACGCTAATGAACATGATTACGTGTATCAAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATCATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACAGCCCAACACTTTCTTACGGATCCTACTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCGTTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTGGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTATGTCAGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTTGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGTGACGATGATCTGAAGCCAGCCGTCACTGCAGAACCCGAGATAATGGAAACTGTTTTGACATCACAGGACGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCAACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAATTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA 1968 43.8 MGLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELAKALQYLHNLGIVHRDVKPANVLLDKDLHPHLADFGLATHRKYLKEISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLAAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRKGPESVTPIQPDLCGRLSDANEHDYVYQEDINWSNQGEHCSQKSSDADRCALNEWFDFSTDHSAYSPTLSYGSYSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCQAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEIMETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29583316 29594092 - CcPI632755_10g016220.1 Cco10g1622 190580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1622 655 PANTHER PROTEIN PHOSPHATASE 357 644 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco10g1622 655 Pfam Protein phosphatase 2C 389 638 IPR001932 -
Cco10g1622 655 Pfam Protein kinase domain 33 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1622 655 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1622 655 SMART serkin_6 30 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1622 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1622 655 ProSiteProfiles PPM-type phosphatase domain profile. 388 645 IPR001932 -
Cco10g1622 655 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 379 649 - -
Cco10g1622 655 Gene3D - 378 650 IPR036457 -
Cco10g1622 655 SMART PP2C_SIG_2 403 645 IPR001932 -
Cco10g1622 655 SMART PP2C_4 378 643 IPR001932 -
Cco10g1622 655 Gene3D Transferase(Phosphotransferase) domain 1 17 329 - -
Cco10g1622 655 SUPERFAMILY PP2C-like 380 647 IPR036457 -
Cco10g1622 655 SUPERFAMILY Protein kinase-like (PK-like) 24 332 IPR011009 -
Cco10g1622 655 CDD PP2Cc 388 645 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1622 Cco-Chr10:29583316 Cco11g1147 Cco-Chr11:22402226 8.20E-31 dispersed
Cco10g1622 Cco-Chr10:29583316 Cco04g2089 Cco-Chr4:34819877 2.90E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87168 PF00069 Pkinase 1.20E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1622 - - - 0.0