Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1624 | ATGGTTCTCTCTCTCATCCTTCTCTCTCTCCTCCTTCTCCTCGTCGCCTACAACCTCTACAACCGCCTCCGGTTCAAGCTCCCTCCAGGGCCACGGCCGCTTCCGGTGGTCGGAAACCTGTACGACGTGAAACCGGTCCGGTTCAGATGCTACGCGGAGTGGGCCAAGCAGTACGGTCCGATCATATCGGTTTGGTTCGGGTCGACGCTAAACGTGGTGGTGTCGAACACGGAGCTGGCTAGGGAAGTTCTGAAGGAGCACGACCAGAGCCTGGCGGACCGGCACCGGAGCCGATCGGCGGCGAAATTTAGCCGGGACGGGAAGGACCTGATTTGGGCGGATTATGGACCTCATTATGTGAAGGTGAGGAAAGTTTGTACAATCGAACTGTTCTCTCCGAAACGACTCGAATCTCTGAGGCCGATTAGAGAAGATGAAGTTTCCGCCATGGTTGAAGATGTCTTCAACCACTGCACTAATTCTGAGAACTATGGAAAGAGCTTGAAGCTGAGGGAGTTTCTGGGAGCAGTTTCATTCAACAACATCACAAGGCTCGCATTTGGGAAGAGGTTTGTGAATTCCAATGGCGTTATGGATGAACAGGGCTTGGAATTCAAGGCCATTGTCGCCAATGGCCTCAAGCTCGGCGCCTCCCTGGCTATGGCCGAGCACATCCCTTGGCTCCGCTGGATGTTCCCTCTCGAAGAAGAAGCCTTCGCCAAGCACGGCGCCCGTCGCGACCGTCTCACCCGAGCCATCATGGAAGAGCACACCAAAGCTCGCAACCTGAGCGGCAATGTCAAGAACCACTTCGTTGATGCTCTCCTCACTCTCAAAGACAAGTACGATCTCAGTGAAGACACCATCATTGGCCTCCTTTGGGATATGATCACGGCCGGCATGGACACGACAGCGATTTCAGTGGAATGGGCGATGGCGGAGATCGTAAGAAACCCTAGAGTGCAAAAGAAGGTTCAGGAGGAACTAGACAATGCAATTGGAGTAGATCGGATCATGACAGAGAACGACTTCTCAAATCTTCCATATCTCCAATGCGTCGTAAAGGAGGCGATGAGATTACACCCACCGACGCCATTGATGCTGCCGCACCGATCCAACGCCAACGTGAAGATCGGCGGCTACGACATCCCCAAAGGCTCGAACGTGCACGTGAACGTATGGGCGGTGGCACGTGACCCGGCAGTGTGGAAGAACCCGGAGGAATTCCGGCCGGAGCGGTTCTTTGAAGAGGATGTGGACATGAAAGGGCACGATCTGCGACTGCTGCCGTTCGGAGCAGGGCGGAGGGTTTGTCCAGGGGCTCAATTGGGGATTAATTTGGTGACATCAATGTTGGGGCACCTTCTGCACCACTTCGAGTGGACGCCGCCGCCGGGGATGAAGGCGGAGGAGATCGACATGACGGAGAGCCCTGGATTGGTGTCGTACATGAAGACAGCGGTGCAGGCTGTGGCCACTCCCAGGCTGCCTTCAGGACTGTACAAACGTGCGCCTGTGGACATGTAA | 1527 | 55.27 | MVLSLILLSLLLLLVAYNLYNRLRFKLPPGPRPLPVVGNLYDVKPVRFRCYAEWAKQYGPIISVWFGSTLNVVVSNTELAREVLKEHDQSLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTIELFSPKRLESLRPIREDEVSAMVEDVFNHCTNSENYGKSLKLREFLGAVSFNNITRLAFGKRFVNSNGVMDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMEEHTKARNLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAEIVRNPRVQKKVQEELDNAIGVDRIMTENDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPEEFRPERFFEEDVDMKGHDLRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPPPGMKAEEIDMTESPGLVSYMKTAVQAVATPRLPSGLYKRAPVDM | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29607769 | 29611565 | - | CcPI632755_10g016240.1 | Cco10g1624 | 190582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1624 | 508 | CDD | CYP98 | 58 | 490 | - | - | |
| Cco10g1624 | 508 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 431 | 440 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco10g1624 | 508 | PRINTS | P450 superfamily signature | 429 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | P450 superfamily signature | 299 | 316 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | P450 superfamily signature | 352 | 363 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PANTHER | CYTOCHROME P450 98A9 | 5 | 502 | - | - | |
| Cco10g1624 | 508 | SUPERFAMILY | Cytochrome P450 | 28 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | Gene3D | Cytochrome P450 | 21 | 498 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | Pfam | Cytochrome P450 | 28 | 481 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | FunFam | Cytochrome P450 | 21 | 499 | - | - | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 177 | 195 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 308 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 55 | 74 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 79 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 392 | 416 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 351 | 369 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 438 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 288 | 305 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1624 | 508 | PRINTS | E-class P450 group I signature | 428 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2212 | Cco-Chr5:30863169 | Cco10g1624 | Cco-Chr10:29607769 | 1.00E-52 | dispersed | |
| Cco10g1624 | Cco-Chr10:29607769 | Cco11g0030 | Cco-Chr11:380718 | 2.00E-77 | dispersed | |
| Cco10g1624 | Cco-Chr10:29607769 | Cco05g2865 | Cco-Chr5:36271161 | 9.00E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1624 | K09754 | - | csv:101217257 | 912.524 |