Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1627 | ATGGGATTCTTAGAATGTCTTGGCCATTTCTTTCAAAATGCAAAGCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTATGCCGGAATGAATATCATCTCCACCGTCTCCCTCAACCGGGGTATGAGCCACTATGTGCTCGTTGTCTACCGCCACGCCTTTGCCACTGCCGTCATGGCACCTTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTTAAGATTTTCATTCAGATGTTTGTTCTTGCTCTACTTGGGCCACTGATTGATCAAAACTTCTACTATGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCAATGACATTTGTCATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAAAGAGTGAGATGCCAAGCAAAGTTGTTTGGAACAGTAATGACGGTAGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTGGACCGGGCACGGCCACCAACCGCACGCACCACCTACTGCAGATGCGGCAGCACTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCAATCTTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTCATAACTTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTTTGGTTTGCTTTTTGGGAACCCTTCAGGCCATTGTTGTCACCCTTGCTATGGAGCACCACCCCTCTGCCTGGGCTATCGGCTGGGACTTGAACCTTCTTGCCGCCGCATATGCAGGGATTGTGACTTCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAGGGGCCAGTTTTTGTAACAGCTTTTAGCCCTTTGATGATGGTGATTGTTGCTTTCATGGGATCTCTCATCTTGGCTGAAAAGATTTATTTTGGAGGGATAATTGGAGCAGTGTTGATTGTGATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAAGAAAGCAAAGAGAAAGAAGTTGAAGAGATTGTTGAATTAACAATGAAAGGTGGAGATCAATTGCCAGTAATAAATGAAGGCATTGAAACAATTCAAAAGAAAGAGGGTTTGGCCATTACTATTCCACCCCAAGCTCATGGAGAAGAGGCTTCAAGACACTAA | 1179 | 45.21 | MGFLECLGHFFQNAKPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRCQAKLFGTVMTVVGAMLMTFYKGSVINFFWTGHGHQPHAPPTADAAALNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLAMEHHPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYFGGIIGAVLIVIGLYSVLWGKYKESKEKEVEEIVELTMKGGDQLPVINEGIETIQKKEGLAITIPPQAHGEEASRH | 392 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29623308 | 29625487 | - | CcPI632755_10g016270.1 | Cco10g1627 | 190585 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1627 | 392 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 50 | 159 | - | - | |
| Cco10g1627 | 392 | PANTHER | WAT1-RELATED PROTEIN | 18 | 346 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cco10g1627 | 392 | Pfam | EamA-like transporter family | 18 | 157 | IPR000620 | GO:0016020(InterPro) | |
| Cco10g1627 | 392 | Pfam | EamA-like transporter family | 196 | 334 | IPR000620 | GO:0016020(InterPro) | |
| Cco10g1627 | 392 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 233 | 338 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g0696 | Cco-Chr4:21559731 | Cco10g1627 | Cco-Chr10:29623308 | 1.30E-125 | dispersed | |
| Cco06g1158 | Cco-Chr6:20341212 | Cco10g1627 | Cco-Chr10:29623308 | 1.40E-51 | dispersed | |
| Cco08g0692 | Cco-Chr8:18357870 | Cco10g1627 | Cco-Chr10:29623308 | 4.40E-93 | dispersed | |
| Cco08g0836 | Cco-Chr8:20197648 | Cco10g1627 | Cco-Chr10:29623308 | 3.20E-61 | dispersed | |
| Cco08g1649 | Cco-Chr8:27981629 | Cco10g1627 | Cco-Chr10:29623308 | 1.10E-62 | dispersed | |
| Cco09g2208 | Cco-Chr9:36426993 | Cco10g1627 | Cco-Chr10:29623308 | 8.70E-67 | dispersed | |
| Cco09g2209 | Cco-Chr9:36453328 | Cco10g1627 | Cco-Chr10:29623308 | 1.60E-87 | dispersed | |
| Cco10g1627 | Cco-Chr10:29623308 | Cco11g1361 | Cco-Chr11:26446369 | 5.80E-125 | dispersed | |
| Cco10g1625 | Cco-Chr10:29618490 | Cco10g1627 | Cco-Chr10:29623308 | 1.80E-23 | proximal | |
| Cco10g1626 | Cco-Chr10:29619340 | Cco10g1627 | Cco-Chr10:29623308 | 3.50E-11 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1627 | - | - | - | 0.0 |