Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1627 ATGGGATTCTTAGAATGTCTTGGCCATTTCTTTCAAAATGCAAAGCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTATGCCGGAATGAATATCATCTCCACCGTCTCCCTCAACCGGGGTATGAGCCACTATGTGCTCGTTGTCTACCGCCACGCCTTTGCCACTGCCGTCATGGCACCTTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTTAAGATTTTCATTCAGATGTTTGTTCTTGCTCTACTTGGGCCACTGATTGATCAAAACTTCTACTATGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCAATGACATTTGTCATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAAAGAGTGAGATGCCAAGCAAAGTTGTTTGGAACAGTAATGACGGTAGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTGGACCGGGCACGGCCACCAACCGCACGCACCACCTACTGCAGATGCGGCAGCACTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCAATCTTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTCATAACTTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTTTGGTTTGCTTTTTGGGAACCCTTCAGGCCATTGTTGTCACCCTTGCTATGGAGCACCACCCCTCTGCCTGGGCTATCGGCTGGGACTTGAACCTTCTTGCCGCCGCATATGCAGGGATTGTGACTTCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAGGGGCCAGTTTTTGTAACAGCTTTTAGCCCTTTGATGATGGTGATTGTTGCTTTCATGGGATCTCTCATCTTGGCTGAAAAGATTTATTTTGGAGGGATAATTGGAGCAGTGTTGATTGTGATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAAGAAAGCAAAGAGAAAGAAGTTGAAGAGATTGTTGAATTAACAATGAAAGGTGGAGATCAATTGCCAGTAATAAATGAAGGCATTGAAACAATTCAAAAGAAAGAGGGTTTGGCCATTACTATTCCACCCCAAGCTCATGGAGAAGAGGCTTCAAGACACTAA 1179 45.21 MGFLECLGHFFQNAKPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRCQAKLFGTVMTVVGAMLMTFYKGSVINFFWTGHGHQPHAPPTADAAALNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLAMEHHPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYFGGIIGAVLIVIGLYSVLWGKYKESKEKEVEEIVELTMKGGDQLPVINEGIETIQKKEGLAITIPPQAHGEEASRH 392
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 29623308 29625487 - CcPI632755_10g016270.1 Cco10g1627 190585
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1627 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Cco10g1627 392 PANTHER WAT1-RELATED PROTEIN 18 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco10g1627 392 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020(InterPro)
Cco10g1627 392 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020(InterPro)
Cco10g1627 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 338 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0696 Cco-Chr4:21559731 Cco10g1627 Cco-Chr10:29623308 1.30E-125 dispersed
Cco06g1158 Cco-Chr6:20341212 Cco10g1627 Cco-Chr10:29623308 1.40E-51 dispersed
Cco08g0692 Cco-Chr8:18357870 Cco10g1627 Cco-Chr10:29623308 4.40E-93 dispersed
Cco08g0836 Cco-Chr8:20197648 Cco10g1627 Cco-Chr10:29623308 3.20E-61 dispersed
Cco08g1649 Cco-Chr8:27981629 Cco10g1627 Cco-Chr10:29623308 1.10E-62 dispersed
Cco09g2208 Cco-Chr9:36426993 Cco10g1627 Cco-Chr10:29623308 8.70E-67 dispersed
Cco09g2209 Cco-Chr9:36453328 Cco10g1627 Cco-Chr10:29623308 1.60E-87 dispersed
Cco10g1627 Cco-Chr10:29623308 Cco11g1361 Cco-Chr11:26446369 5.80E-125 dispersed
Cco10g1625 Cco-Chr10:29618490 Cco10g1627 Cco-Chr10:29623308 1.80E-23 proximal
Cco10g1626 Cco-Chr10:29619340 Cco10g1627 Cco-Chr10:29623308 3.50E-11 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1627 - - - 0.0