Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1632 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCTGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 52.0 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPLPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVAQFGSPPNGQFEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29685087 29685938 + CcPI632755_10g016320.1 Cco10g1632 190590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1632 283 FunFam Two-component response regulator 87 150 - -
Cco10g1632 283 MobiDBLite consensus disorder prediction 252 283 - -
Cco10g1632 283 Gene3D - 88 150 - -
Cco10g1632 283 MobiDBLite consensus disorder prediction 1 20 - -
Cco10g1632 283 MobiDBLite consensus disorder prediction 48 65 - -
Cco10g1632 283 MobiDBLite consensus disorder prediction 40 89 - -
Cco10g1632 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Cco10g1632 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
Cco10g1632 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 231 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1632 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Cco10g1632 283 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0701 Cco-Chr4:21737176 Cco10g1632 Cco-Chr10:29685087 3.90E-105 dispersed
Cco09g0530 Cco-Chr9:4635744 Cco10g1632 Cco-Chr10:29685087 4.40E-07 dispersed
Cco10g1632 Cco-Chr10:29685087 Cco11g0371 Cco-Chr11:3717960 2.70E-15 dispersed
Cco10g1632 Cco-Chr10:29685087 Cco03g0134 Cco-Chr3:1297957 1.60E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60140 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1632 - - - 0.0