Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1632 | ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCTGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA | 852 | 52.0 | MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPLPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVAQFGSPPNGQFEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29685087 | 29685938 | + | CcPI632755_10g016320.1 | Cco10g1632 | 190590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1632 | 283 | FunFam | Two-component response regulator | 87 | 150 | - | - | |
Cco10g1632 | 283 | MobiDBLite | consensus disorder prediction | 252 | 283 | - | - | |
Cco10g1632 | 283 | Gene3D | - | 88 | 150 | - | - | |
Cco10g1632 | 283 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco10g1632 | 283 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
Cco10g1632 | 283 | MobiDBLite | consensus disorder prediction | 40 | 89 | - | - | |
Cco10g1632 | 283 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 96 | 147 | IPR017930 | - | |
Cco10g1632 | 283 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 92 | 144 | IPR006447 | GO:0003677(InterPro) | |
Cco10g1632 | 283 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 4 | 231 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1632 | 283 | SUPERFAMILY | Homeodomain-like | 88 | 148 | IPR009057 | - | |
Cco10g1632 | 283 | Pfam | Myb-like DNA-binding domain | 94 | 143 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0701 | Cco-Chr4:21737176 | Cco10g1632 | Cco-Chr10:29685087 | 3.90E-105 | dispersed | |
Cco09g0530 | Cco-Chr9:4635744 | Cco10g1632 | Cco-Chr10:29685087 | 4.40E-07 | dispersed | |
Cco10g1632 | Cco-Chr10:29685087 | Cco11g0371 | Cco-Chr11:3717960 | 2.70E-15 | dispersed | |
Cco10g1632 | Cco-Chr10:29685087 | Cco03g0134 | Cco-Chr3:1297957 | 1.60E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60140 | PF00249 | Myb_DNA-binding | 2.00E-08 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1632 | - | - | - | 0.0 |