Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1643 ATGTCTTCTGGGGCTCGATTGCTTGTCTTGGATTTTGCCCTCTCTTTTATGTGGTTATGGTCGGGGGTTCTCGTTAAGATCTTTGTTTTTGGGATATTGGGGTTCGGAAATGATCTGATTACTGAGGTTGTCAAGGCTGTCGTTTCGATTCTCAACATGTTTTTTTTTGCGTTCTTGGTGAAAATTTCAAAAGGGGCTGCTTATAATCCTCTTAGCATCTTGTCTGCTGCTTTTTCTGGGGATTTCAGCAGCTTTCTCTTCACTGTTGGTGCCAGAATCCCTGCTCAGGTAATGGGAGCTATTACCGCTGTTAGGCTGATTATCCATACATTTCCCGAAGCAGGACGAGGGCCTCGTTTAAACGTTGGCATCCATCATGGAGCTTTGACAGAAGGATTGTTAACGTTCGCCATTGTATTTATCTCACTTGGACTTTCAAGGAAAATCGATGGAAATTTCTTCATGAAGACTTGGATCTCAAGTTTATCCAAGTTAGCTCTTCATATTCTCGGTTCCGACTTAACTGGTGGCTGTATGAACCCTGCATCTGTAATGGGATGGGCGTATGCTCGTGGGGAACATATAACGATCGAACATATTCTTGTATACTGGATCGCTCCAATTCAAGGAACTATAGTAGCAGTATTGACGTTTAAGTTACTATTTCGACAATCGAAAGAGGAGAAAGTAAATATGAAGAAGAAATCAGAATAG 714 41.88 MSSGARLLVLDFALSFMWLWSGVLVKIFVFGILGFGNDLITEVVKAVVSILNMFFFAFLVKISKGAAYNPLSILSAAFSGDFSSFLFTVGARIPAQVMGAITAVRLIIHTFPEAGRGPRLNVGIHHGALTEGLLTFAIVFISLGLSRKIDGNFFMKTWISSLSKLALHILGSDLTGGCMNPASVMGWAYARGEHITIEHILVYWIAPIQGTIVAVLTFKLLFRQSKEEKVNMKKKSE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29846725 29850399 - CcPI632755_10g016430.1 Cco10g1643 190601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1643 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 PANTHER AQUAPORIN SIP2-1-RELATED 3 237 IPR044226 GO:0015267(InterPro)
Cco10g1643 237 Gene3D Glycerol uptake facilitator protein. 3 237 IPR023271 -
Cco10g1643 237 Pfam Major intrinsic protein 45 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1643 237 SUPERFAMILY Aquaporin-like 6 235 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1643 K09875 - csv:101214379 429.483