Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1651 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCCTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGGAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATACTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCAAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACACTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCCGCTGACATTAAGATTTTACGGTGCGGTCCACCCCCGATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.72 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDTDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29930603 29934939 + CcPI632755_10g016510.1 Cco10g1651 190609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1651 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cco10g1651 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cco10g1651 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Cco10g1651 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Cco10g1651 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Cco10g1651 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cco10g1651 280 CDD cyt_b5_reduct_like 49 280 - -
Cco10g1651 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cco10g1651 280 Gene3D Translation factors 36 138 - -
Cco10g1651 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
Cco10g1651 280 Gene3D - 139 280 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0671 Cco-Chr4:21158968 Cco10g1651 Cco-Chr10:29930603 2.90E-134 dispersed
Cco10g1651 Cco-Chr10:29930603 Cco11g0308 Cco-Chr11:3102073 3.60E-52 dispersed
Cco10g1651 Cco-Chr10:29930603 Cco03g0942 Cco-Chr3:12089539 1.20E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1651 K00326 - csv:101212931 528.48