Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1651 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCCTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGGAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATACTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCAAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACACTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCCGCTGACATTAAGATTTTACGGTGCGGTCCACCCCCGATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.72 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDTDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29930603 29934939 + CcPI632755_10g016510.1 Cco10g1651 190609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1651 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cco10g1651 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cco10g1651 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Cco10g1651 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Cco10g1651 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Cco10g1651 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cco10g1651 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cco10g1651 280 CDD cyt_b5_reduct_like 49 280 - -
Cco10g1651 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cco10g1651 280 Gene3D Translation factors 36 138 - -
Cco10g1651 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
Cco10g1651 280 Gene3D - 139 280 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1651 K00326 - - csv:101212931 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0671 Cco-Chr4:21158968 Cco10g1651 Cco-Chr10:29930603 2.90E-134 dispersed
Cco10g1651 Cco-Chr10:29930603 Cco11g0308 Cco-Chr11:3102073 3.60E-52 dispersed
Cco10g1651 Cco-Chr10:29930603 Cco03g0942 Cco-Chr3:12089539 1.20E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86