Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1692 ATGGGTGCGGTTAAATTATTTCCAAGGCTTCCACTTCCTCTGAGCACCCTCATAATTTCTCACTCTCCAGAGTCAAACACTCTCTTCCAAGCTCTAGATCGATCTCTCTCACTCCTTGAATCATCATTGACTTCCATTTTCTCCCTAATTTTTGCTCGCATTTCTCTCAATGAAGGAAGCATGTTTTGTGCCATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCGCGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTATAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGTGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTATTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTTAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTTCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGGCTAAGATCTTCTTTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGCTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCCGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCGTCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTGTCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCTAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2211 46.59 MGAVKLFPRLPLPLSTLIISHSPESNTLFQALDRSLSLLESSLTSIFSLIFARISLNEGSMFCAMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVDVIVAPLRHGELKSTLIELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCLRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30465501 30469497 + CcPI632755_10g016920.1 Cco10g1692 190650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1692 736 Gene3D - 73 213 IPR036770 -
Cco10g1692 736 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 361 IPR000571 GO:0046872(InterPro)
Cco10g1692 736 SMART c3hfinal6 336 362 IPR000571 GO:0046872(InterPro)
Cco10g1692 736 SMART c3hfinal6 371 394 IPR000571 GO:0046872(InterPro)
Cco10g1692 736 Pfam Ankyrin repeats (3 copies) 118 190 IPR002110 GO:0005515(InterPro)
Cco10g1692 736 MobiDBLite consensus disorder prediction 682 705 - -
Cco10g1692 736 MobiDBLite consensus disorder prediction 516 548 - -
Cco10g1692 736 ProSiteProfiles Ankyrin repeat region circular profile. 156 190 - -
Cco10g1692 736 MobiDBLite consensus disorder prediction 231 259 - -
Cco10g1692 736 ProSiteProfiles Zinc finger C3H1-type profile. 341 363 IPR000571 GO:0046872(InterPro)
Cco10g1692 736 FunFam Zinc finger CCCH domain-containing protein 66 294 362 - -
Cco10g1692 736 Gene3D - 336 399 - -
Cco10g1692 736 ProSiteProfiles Ankyrin repeat profile. 156 191 IPR002110 GO:0005515(InterPro)
Cco10g1692 736 PANTHER UNKEMPT FAMILY MEMBER 115 681 IPR045234 -
Cco10g1692 736 SMART ANK_2a 156 188 IPR002110 GO:0005515(InterPro)
Cco10g1692 736 SMART ANK_2a 121 151 IPR002110 GO:0005515(InterPro)
Cco10g1692 736 SUPERFAMILY Ankyrin repeat 70 201 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0446 Cco-Chr7:5218054 Cco10g1692 Cco-Chr10:30465501 2.50E-131 dispersed
Cco10g1225 Cco-Chr10:24962894 Cco10g1692 Cco-Chr10:30465501 1.60E-226 dispersed
Cco10g1692 Cco-Chr10:30465501 Cco11g0213 Cco-Chr11:2060806 1.80E-50 dispersed
Cco10g1692 Cco-Chr10:30465501 Cco02g2086 Cco-Chr2:33755065 2.70E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60147 PF12796 Ank_2 2.10E-09 CL0465 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1692 - - - 0.0