Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1704 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAGTTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCACCACCACGCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTGGCCCCACACGATCATCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGCTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGTCTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1071 42.86 MDDPSTNFFFTNLFKFNSPTTTSFPHHHHPSSSSSNPFPPPPPPPPNFFPTFHHHHHAPPPSSPPLRQALPLLSLGPTRSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNANNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30590448 30592969 + CcPI632755_10g017040.1 Cco10g1704 190662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1704 356 SMART c2h2final6 174 196 IPR013087 -
Cco10g1704 356 SMART c2h2final6 258 278 IPR013087 -
Cco10g1704 356 MobiDBLite consensus disorder prediction 337 356 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 19 33 - -
Cco10g1704 356 FunFam Zinc finger protein WIP2 227 309 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 110 142 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 34 50 - -
Cco10g1704 356 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Cco10g1704 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 278 IPR013087 -
Cco10g1704 356 Coils Coil 108 143 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 309 356 - -
Cco10g1704 356 SUPERFAMILY beta-beta-alpha zinc fingers 170 196 IPR036236 -
Cco10g1704 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Cco10g1704 356 PANTHER ZINC FINGER PROTEIN WIP2 27 329 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco10g1704 356 Gene3D Classic Zinc Finger 235 313 - -
Cco10g1704 356 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 257 281 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 82 97 - -
Cco10g1704 356 FunFam zinc finger protein WIP2-like 173 196 - -
Cco10g1704 356 Gene3D Classic Zinc Finger 173 196 - -
Cco10g1704 356 MobiDBLite consensus disorder prediction 19 143 - -
Cco10g1704 356 SUPERFAMILY beta-beta-alpha zinc fingers 240 278 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1365 Cco-Chr1:23128183 Cco10g1704 Cco-Chr10:30590448 6.90E-66 dispersed
Cco03g1004 Cco-Chr3:15600211 Cco10g1704 Cco-Chr10:30590448 9.40E-85 dispersed
Cco04g0150 Cco-Chr4:3517654 Cco10g1704 Cco-Chr10:30590448 3.80E-101 dispersed
Cco09g0403 Cco-Chr9:3679271 Cco10g1704 Cco-Chr10:30590448 2.90E-87 dispersed
Cco10g1704 Cco-Chr10:30590448 Cco02g2486 Cco-Chr2:37194600 1.70E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60150 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1704 - - - 0.0