Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1708 ATGGAGATTAAAGTAGGGACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGATGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTGGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCGTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCCGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTTGAAAGCTCATTTCCGACGATGGTAACGCCATTGTTGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATTCAACGGTTCTTCTTCAAAGGTTCTCTCTAATTATCAGAGTCAAGAGCCGAGCGTCGACTTGGTTGGAAACCGGATTGCTATCAACAACAACCAGAGAGGAATGTGA 1191 48.61 MEIKVGTVVGSSPIGRQSDDTGLESLQFCDEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSVQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVPLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLLWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSAFNGSSSKVLSNYQSQEPSVDLVGNRIAINNNQRGM 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30630282 30634868 - CcPI632755_10g017080.1 Cco10g1708 190666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1708 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983(InterPro)
Cco10g1708 396 MobiDBLite consensus disorder prediction 120 167 - -
Cco10g1708 396 MobiDBLite consensus disorder prediction 183 201 - -
Cco10g1708 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983(InterPro)
Cco10g1708 396 SMART finulus 216 266 IPR011598 GO:0046983(InterPro)
Cco10g1708 396 Coils Coil 250 270 - -
Cco10g1708 396 FunFam transcription factor bHLH48-like isoform X1 207 279 - -
Cco10g1708 396 MobiDBLite consensus disorder prediction 120 201 - -
Cco10g1708 396 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983(InterPro)
Cco10g1708 396 Gene3D - 207 280 IPR036638 GO:0046983(InterPro)
Cco10g1708 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 340 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco10g1708 396 CDD bHLH_AtBPE_like 200 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1708 Cco-Chr10:30630282 Cco11g0449 Cco-Chr11:4696714 2.40E-33 dispersed
Cco10g1708 Cco-Chr10:30630282 Cco02g0529 Cco-Chr2:4951182 1.50E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60151 PF00010 HLH 1.60E-05 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1708 - - - 0.0