Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1708 | ATGGAGATTAAAGTAGGGACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGATGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTGGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCGTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCCGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTTGAAAGCTCATTTCCGACGATGGTAACGCCATTGTTGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATTCAACGGTTCTTCTTCAAAGGTTCTCTCTAATTATCAGAGTCAAGAGCCGAGCGTCGACTTGGTTGGAAACCGGATTGCTATCAACAACAACCAGAGAGGAATGTGA | 1191 | 48.61 | MEIKVGTVVGSSPIGRQSDDTGLESLQFCDEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSVQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVPLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLLWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSAFNGSSSKVLSNYQSQEPSVDLVGNRIAINNNQRGM | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30630282 | 30634868 | - | CcPI632755_10g017080.1 | Cco10g1708 | 190666 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1708 | 396 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 210 | 260 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1708 | 396 | MobiDBLite | consensus disorder prediction | 120 | 167 | - | - | |
Cco10g1708 | 396 | MobiDBLite | consensus disorder prediction | 183 | 201 | - | - | |
Cco10g1708 | 396 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 208 | 279 | IPR036638 | GO:0046983(InterPro) | |
Cco10g1708 | 396 | SMART | finulus | 216 | 266 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1708 | 396 | Coils | Coil | 250 | 270 | - | - | |
Cco10g1708 | 396 | FunFam | transcription factor bHLH48-like isoform X1 | 207 | 279 | - | - | |
Cco10g1708 | 396 | MobiDBLite | consensus disorder prediction | 120 | 201 | - | - | |
Cco10g1708 | 396 | Pfam | Helix-loop-helix DNA-binding domain | 214 | 261 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1708 | 396 | Gene3D | - | 207 | 280 | IPR036638 | GO:0046983(InterPro) | |
Cco10g1708 | 396 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 118 | 340 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cco10g1708 | 396 | CDD | bHLH_AtBPE_like | 200 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1708 | Cco-Chr10:30630282 | Cco11g0449 | Cco-Chr11:4696714 | 2.40E-33 | dispersed | |
Cco10g1708 | Cco-Chr10:30630282 | Cco02g0529 | Cco-Chr2:4951182 | 1.50E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60151 | PF00010 | HLH | 1.60E-05 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1708 | - | - | - | 0.0 |