Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1716 | ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAACCCCCAATTTCCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCAATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATGGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACAACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAAAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATATGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA | 1536 | 45.83 | MASSNIKSTSIIQQANQQEEEKQQQLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQTPNFPDHHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHGDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFIWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD | 511 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30698412 | 30706576 | - | CcPI632755_10g017160.1 | Cco10g1716 | 190674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1716 | 511 | ProSiteProfiles | DOG1 domain profile. | 293 | 507 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cco10g1716 | 511 | Coils | Coil | 238 | 265 | - | - | |
Cco10g1716 | 511 | Gene3D | - | 218 | 268 | - | - | |
Cco10g1716 | 511 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cco10g1716 | 511 | MobiDBLite | consensus disorder prediction | 107 | 127 | - | - | |
Cco10g1716 | 511 | FunFam | BZIP family transcription factor | 218 | 267 | - | - | |
Cco10g1716 | 511 | Pfam | Basic region leucine zipper | 216 | 260 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1716 | 511 | CDD | bZIP_HBP1b-like | 219 | 271 | - | - | |
Cco10g1716 | 511 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 217 | 261 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1716 | 511 | SUPERFAMILY | Leucine zipper domain | 219 | 261 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1716 | 511 | SMART | brlzneu | 215 | 295 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1716 | 511 | MobiDBLite | consensus disorder prediction | 164 | 184 | - | - | |
Cco10g1716 | 511 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco10g1716 | 511 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 127 | 510 | - | - | |
Cco10g1716 | 511 | Coils | Coil | 12 | 32 | - | - | |
Cco10g1716 | 511 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 222 | 237 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g1716 | 511 | MobiDBLite | consensus disorder prediction | 107 | 222 | - | - | |
Cco10g1716 | 511 | Pfam | Seed dormancy control | 311 | 385 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2371 | Cco-Chr2:36105989 | Cco10g1716 | Cco-Chr10:30698412 | 5.90E-90 | dispersed | |
Cco10g1614 | Cco-Chr10:29507372 | Cco10g1716 | Cco-Chr10:30698412 | 1.30E-87 | dispersed | |
Cco10g1716 | Cco-Chr10:30698412 | Cco11g0792 | Cco-Chr11:9033724 | 4.00E-65 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60153 | PF14144 | DOG1 | 1.70E-30 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1716 | K14431 | - | csv:101204923 | 846.654 |