Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1716 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAACCCCCAATTTCCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCAATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATGGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACAACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAAAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATATGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1536 45.83 MASSNIKSTSIIQQANQQEEEKQQQLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQTPNFPDHHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHGDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFIWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30698412 30706576 - CcPI632755_10g017160.1 Cco10g1716 190674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1716 511 ProSiteProfiles DOG1 domain profile. 293 507 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco10g1716 511 Coils Coil 238 265 - -
Cco10g1716 511 Gene3D - 218 268 - -
Cco10g1716 511 MobiDBLite consensus disorder prediction 1 34 - -
Cco10g1716 511 MobiDBLite consensus disorder prediction 107 127 - -
Cco10g1716 511 FunFam BZIP family transcription factor 218 267 - -
Cco10g1716 511 Pfam Basic region leucine zipper 216 260 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1716 511 CDD bZIP_HBP1b-like 219 271 - -
Cco10g1716 511 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 261 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1716 511 SUPERFAMILY Leucine zipper domain 219 261 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1716 511 SMART brlzneu 215 295 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1716 511 MobiDBLite consensus disorder prediction 164 184 - -
Cco10g1716 511 MobiDBLite consensus disorder prediction 1 20 - -
Cco10g1716 511 PANTHER TRANSCRIPTION FACTOR TGA9 127 510 - -
Cco10g1716 511 Coils Coil 12 32 - -
Cco10g1716 511 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 222 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1716 511 MobiDBLite consensus disorder prediction 107 222 - -
Cco10g1716 511 Pfam Seed dormancy control 311 385 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2371 Cco-Chr2:36105989 Cco10g1716 Cco-Chr10:30698412 5.90E-90 dispersed
Cco10g1614 Cco-Chr10:29507372 Cco10g1716 Cco-Chr10:30698412 1.30E-87 dispersed
Cco10g1716 Cco-Chr10:30698412 Cco11g0792 Cco-Chr11:9033724 4.00E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60153 PF14144 DOG1 1.70E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1716 K14431 - csv:101204923 846.654