Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1720 ATGCTCCAACAGCGTCTGCTTACGTATTTTAGTGTCGTTGTCTATTCTACGATTCTGACTTCGCGGGTTTGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGGTCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCCTGTGATGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAGCAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTCAGCCAAAATCTTCCACATACTTTGTCTTACATGGGACGTCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTAATTGACTTAAACATCCAAGACAATTATTTTAGTGGCATTATTCCAAAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTTCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGAACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCGGGTGGAATTGTTCTCCTGGTTGGAGGGTTAACACTAGTAGTTAGCTTTGCAGCTCTCTTTTTCGTATTTTCCATGAAGAAAGTGCATGACAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCCTCTACTGCAACAGAAGAGAGCTCACAAAGCTTTCCCCTGAGTTCACTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTGACAGAGCTTCAATCCACTACAAACAAGTTTAGTCAAGAGAATCTTTTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAATATCAACATGGGAGAGCTGTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCGAAACATTGTTACACTGCTCGGATATTGTGTAGAGCATGGACAACATATACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATATATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCCAGGGCCTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGACGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAACAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAGCCGAGGAAGGAGCAATTGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAGCAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCACGCTTTGTCGATATTATCTCCCTTTGTATACAGTCTGTGAAAGAATTTCGACCGCCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGCTACAGCGGATGGAACTGAAGTGGATCCTTTTGAGAAATCCTTTCGTTCTACCAATACTGGCTTCCTCATCAGCTGTTCTATACTCAAGAACTTCGTCTTCTCCATTGCCATACTCTCAGTTTACACTCCACTCTGCCCTTCTCTTCCCTCTGGGACGAAACTCCGTGCGTTACTGTATTCCAGTGTCCTTGTCTTCTTGGCAATTCTGACTTCAGTCGTTCAGTGCTTTACTGACCCGTTCGATGTTATTGCTCTTCTCAATCTGTATAGTACCCTAAATTACCCACCTGAGCTTAAAGGATGGAGAACAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCTTCTGTAATAAACCTTAAACTTAATAGACTAAACCTTTCCGGGAATCTTGGAGACCAGCTTTATCTTCTCCATAATTTGAAGCAACTGGATGCTAGTTCCAATTCAATTCTGGGTGAATTTCCTTCTGGCTTACCCCTAAATGTCACTTCTGTGAATCTAAGCCATAATGTCCTATCTGGCCCCATCGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATATAACAATTTCACTGGAGATTTACCAAGTTCATTTGCTTCCTTGACTAATATCAATAGACTGATTGGGGGAAATAGGTTCGATGTAAGTAATTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACGCGAAACAATAGTAGCTTTCCATTAACAGAACCGATTATCATTGAGAAATGTCCCTACAAGAAAAAGGGGGGGAAAGGGGGGGAAAGATTGGGCCCTGCTGGAATAGCTATAGTGGCTGGTGGAGGTGGTTTTGTAATAATCTTTGCAGCTCTCTTTATTGCAATCTGCAACACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACGTCAACGTGTCTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACCACACCAGTTGGCAGTCCCCATATCTTGCCTCTCAGTTCTCCAGACATAGGTGGCGGTCTGAATCATGCATGTCCTACTCGTCATGCTAGAACTGAGAGGGGATGTAGCAGAAGTTTCTCTAAGAGATCCTGGTTCCCAGAAAAAACAAAAACTTACACTGTCACAGAGCTCGAATCCGCTACTAACAAGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAGAGGGTTGATATGGCGGCACTCTCTTTCACACAAGAACAACAGTTTCTGGATGTGGTCTGCACTGCTTCCCGTATGAGGCACCCTAACATTGTTAGCCTTCTTGGATACAGTGTAGAGAATGGACAACATTTACTAGCCTATGAGTACGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCGTCGAGTGTTCGAATCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCCCCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGGATTCATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTGCTTTTGCTGACACTGGCTACTTTGCACCTGAATATGGCCAATCTGGGATTGATCATACCAAAAGTGATGTGTATGCATTCGGAGTGTTGTTTCTGGAGCTTATTACCGCAAAGAGACCAAACGATTTGAGACCAGGGATCGAGCAATCTCTGTCAAGATGGGCGTCATTTCAGCTTCACGACCGTGGGAGTCTAGATGAGATTATTGATCCTGAGATTAAAGGAACATTATCCTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGGCCACCCATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAGAGAAGGTTCGAGATGGAAAAACGTGCTGCAGCGGAAGGTAAAGTAGTTGACACTTTCGAGAAATCCTTCCACACAACTAACACAGGGATTGTAAGACATCCTAACAAGACTGTCATTGGCATCAATGCTATCAATCGTCGCTTCTGGGTTCGTGCTATGATGGAGGACGCATCAAAGAACGGCGTCCTGGCCGTCCAAACGCTAAGGAACAACATAATGGCGTCTACTCTTTTGGCATCGACGGCGATAATGCTCTGTTCTCTAATCGCCGTCTTAATGACAAGCGGCGGCCACAGCGAATCTCCATTAGTCGTACTCGGCGACAGAAGCCAGTTCAGTTTCTCCATCAAATTTTTCGCCATTTTGCTTTGCTTTCTCGTAGCATTTTTGTTCAATGTTCAATCCATTAGGTATTATAGCCATGCCAGCATTCTGATCAACACGCCTTTCAAGAAAATTGCAATCGACGATCATAATCAACGGCTCACGGCGGAATACGTGGCGGCGACGGTGAACAGAGGCAGCTATTTCTGGTCGTTGGGATTGCGAGCTTTCTACTTCTCGTTTCCTCTGTTTTTGTGGATTTTTGGACCTATTCCTATGTTTTCTTCTTCATTTCTGCTTGTTTTTATGCTTTATTTCCTTGATGCTACTTTTGAATTCTGCTGGACGGATGGGAATTTGGATTACCTTCCTCAAAGAGACGAAGAAGAGGAAATTGGGAAATAG 4833 43.84 MLQQRLLTYFSVVVYSTILTSRVWAFTNPPDVIALQGLYSAMNYPLELKGWRKEGGDPCDESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHFSQNLPHTLSYMGRLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLNIQDNYFSGIIPKNFRNIPNLWIGGNRFRPEVNSPPWDFPLEKEPMVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGIVLLVGGLTLVVSFAALFFVFSMKKVHDKKINLKIGNMLPRSLPLGKAEDGSSTATEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLTELQSTTNKFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHRNIVTLLGYCVEHGQHILGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELTPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQLLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQSVKEFRPPMSEIVEHLTNLQRKMEMVKRATADGTEVDPFEKSFRSTNTGFLISCSILKNFVFSIAILSVYTPLCPSLPSGTKLRALLYSSVLVFLAILTSVVQCFTDPFDVIALLNLYSTLNYPPELKGWRTDGGDPCDGTWTGVFCVGSSVINLKLNRLNLSGNLGDQLYLLHNLKQLDASSNSILGEFPSGLPLNVTSVNLSHNVLSGPIGNAFSGLQNLVEMDLSYNNFTGDLPSSFASLTNINRLIGGNRFDVSNSPPWDFSVETTPLTRNNSSFPLTEPIIIEKCPYKKKGGKGGERLGPAGIAIVAGGGGFVIIFAALFIAICNTQICAKQRSMKHVNVSLPVSKAEDGYSTTPVGSPHILPLSSPDIGGGLNHACPTRHARTERGCSRSFSKRSWFPEKTKTYTVTELESATNKYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMAALSFTQEQQFLDVVCTASRMRHPNIVSLLGYSVENGQHLLAYEYVRNLSLDDALHSVAHNPLSSSVRIQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEGFMPKICDCGLSVLKPLAAQIAFADTGYFAPEYGQSGIDHTKSDVYAFGVLFLELITAKRPNDLRPGIEQSLSRWASFQLHDRGSLDEIIDPEIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRRFEMEKRAAAEGKVVDTFEKSFHTTNTGIVRHPNKTVIGINAINRRFWVRAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSGGHSESPLVVLGDRSQFSFSIKFFAILLCFLVAFLFNVQSIRYYSHASILINTPFKKIAIDDHNQRLTAEYVAATVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFSSSFLLVFMLYFLDATFEFCWTDGNLDYLPQRDEEEEIGK 1610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30746119 30764814 - CcPI632755_10g017200.1 Cco10g1720 190678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1720 1610 MobiDBLite consensus disorder prediction 349 363 - -
Cco10g1720 1610 SUPERFAMILY L domain-like 779 936 - -
Cco10g1720 1610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 695 IPR046959 -
Cco10g1720 1610 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
Cco10g1720 1610 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Cco10g1720 1610 Gene3D Transferase(Phosphotransferase) domain 1 1175 1390 - -
Cco10g1720 1610 Gene3D Transferase(Phosphotransferase) domain 1 493 715 - -
Cco10g1720 1610 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
Cco10g1720 1610 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 1062 1174 - -
Cco10g1720 1610 Gene3D Ribonuclease Inhibitor 782 957 IPR032675 -
Cco10g1720 1610 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1175 1378 - -
Cco10g1720 1610 Pfam Protein kinase domain 1097 1358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Protein kinase domain 416 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Leucine rich repeat N-terminal domain 785 822 IPR013210 -
Cco10g1720 1610 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cco10g1720 1610 Gene3D Phosphorylase Kinase; domain 1 1059 1174 - -
Cco10g1720 1610 Gene3D Phosphorylase Kinase; domain 1 378 492 - -
Cco10g1720 1610 SUPERFAMILY Protein kinase-like (PK-like) 1072 1363 IPR011009 -
Cco10g1720 1610 ProSiteProfiles Protein kinase domain profile. 1097 1371 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Protein of unknown function, DUF599 1397 1587 IPR006747 -
Cco10g1720 1610 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Cco10g1720 1610 MobiDBLite consensus disorder prediction 341 363 - -
Cco10g1720 1610 Pfam Leucine Rich Repeat 896 918 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 782 887 - -
Cco10g1720 1610 SUPERFAMILY L domain-like 27 238 - -
Cco10g1720 1610 SMART LRR_typ_2 894 917 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 140 163 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 94 118 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 848 872 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 164 187 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 188 211 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1720 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1672 Cco-Chr1:29460300 Cco10g1720 Cco-Chr10:30746119 1.80E-44 dispersed
Cco06g1647 Cco-Chr6:27073543 Cco10g1720 Cco-Chr10:30746119 2.50E-49 dispersed
Cco09g0147 Cco-Chr9:1310727 Cco10g1720 Cco-Chr10:30746119 1.10E-89 dispersed
Cco10g1720 Cco-Chr10:30746119 Cco10g0517 Cco-Chr10:6168963 4.70E-56 dispersed
Cco10g1720 Cco-Chr10:30746119 Cco07g1502 Cco-Chr7:29092005 6.30E-101 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco01g1034 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.1e-85 312.4
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco07g1502 . 146 829 Strubbelig Receptor Gene Family AT1G53730 59.5 2.9e-194 675.6
Cco09g0147 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.4e-186 647.9
Cco01g1034 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 4.5e-147 518.8
Cco07g1502 . 146 824 Strubbelig Receptor Gene Family AT3G14350 56.1 4.5e-173 605.1
Cco09g0147 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.3 8.3e-167 584.3
Cco01g1034 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 2.5e-177 619.0
Cco07g1502 . 508 836 Strubbelig Receptor Gene Family AT4G22130 62.8 8.9e-119 424.5
Cco09g0147 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.7e-117 420.2
Cco02g0132 . 485 790 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cco08g0620 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 9.3e-100 361.3
Cco04g2060 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 2.3e-98 356.7
Cco10g1720 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 5.5e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87169 PF00069 Pkinase 5.10E-34 CL0016 Cco PK