Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1720 ATGCTCCAACAGCGTCTGCTTACGTATTTTAGTGTCGTTGTCTATTCTACGATTCTGACTTCGCGGGTTTGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGGTCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCCTGTGATGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAGCAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTCAGCCAAAATCTTCCACATACTTTGTCTTACATGGGACGTCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTAATTGACTTAAACATCCAAGACAATTATTTTAGTGGCATTATTCCAAAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTTCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGAACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGGGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCGGGTGGAATTGTTCTCCTGGTTGGAGGGTTAACACTAGTAGTTAGCTTTGCAGCTCTCTTTTTCGTATTTTCCATGAAGAAAGTGCATGACAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCCTCTACTGCAACAGAAGAGAGCTCACAAAGCTTTCCCCTGAGTTCACTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTGACAGAGCTTCAATCCACTACAAACAAGTTTAGTCAAGAGAATCTTTTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAATATCAACATGGGAGAGCTGTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCGAAACATTGTTACACTGCTCGGATATTGTGTAGAGCATGGACAACATATACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATATATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCCAGGGCCTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGACGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACCAACAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAGCCGAGGAAGGAGCAATTGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAGCAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCACGCTTTGTCGATATTATCTCCCTTTGTATACAGTCTGTGAAAGAATTTCGACCGCCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGCTACAGCGGATGGAACTGAAGTGGATCCTTTTGAGAAATCCTTTCGTTCTACCAATACTGGCTTCCTCATCAGCTGTTCTATACTCAAGAACTTCGTCTTCTCCATTGCCATACTCTCAGTTTACACTCCACTCTGCCCTTCTCTTCCCTCTGGGACGAAACTCCGTGCGTTACTGTATTCCAGTGTCCTTGTCTTCTTGGCAATTCTGACTTCAGTCGTTCAGTGCTTTACTGACCCGTTCGATGTTATTGCTCTTCTCAATCTGTATAGTACCCTAAATTACCCACCTGAGCTTAAAGGATGGAGAACAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTGTTTTGTGTTGGTTCTTCTGTAATAAACCTTAAACTTAATAGACTAAACCTTTCCGGGAATCTTGGAGACCAGCTTTATCTTCTCCATAATTTGAAGCAACTGGATGCTAGTTCCAATTCAATTCTGGGTGAATTTCCTTCTGGCTTACCCCTAAATGTCACTTCTGTGAATCTAAGCCATAATGTCCTATCTGGCCCCATCGGGAATGCTTTTTCTGGCTTACAAAATCTTGTGGAGATGGATCTGTCATATAACAATTTCACTGGAGATTTACCAAGTTCATTTGCTTCCTTGACTAATATCAATAGACTGATTGGGGGAAATAGGTTCGATGTAAGTAATTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACGCGAAACAATAGTAGCTTTCCATTAACAGAACCGATTATCATTGAGAAATGTCCCTACAAGAAAAAGGGGGGGAAAGGGGGGGAAAGATTGGGCCCTGCTGGAATAGCTATAGTGGCTGGTGGAGGTGGTTTTGTAATAATCTTTGCAGCTCTCTTTATTGCAATCTGCAACACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACGTCAACGTGTCTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACCACACCAGTTGGCAGTCCCCATATCTTGCCTCTCAGTTCTCCAGACATAGGTGGCGGTCTGAATCATGCATGTCCTACTCGTCATGCTAGAACTGAGAGGGGATGTAGCAGAAGTTTCTCTAAGAGATCCTGGTTCCCAGAAAAAACAAAAACTTACACTGTCACAGAGCTCGAATCCGCTACTAACAAGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAGAGGGTTGATATGGCGGCACTCTCTTTCACACAAGAACAACAGTTTCTGGATGTGGTCTGCACTGCTTCCCGTATGAGGCACCCTAACATTGTTAGCCTTCTTGGATACAGTGTAGAGAATGGACAACATTTACTAGCCTATGAGTACGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCGTCGAGTGTTCGAATCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCCCCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGGATTCATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGCTGCTCAAATTGCTTTTGCTGACACTGGCTACTTTGCACCTGAATATGGCCAATCTGGGATTGATCATACCAAAAGTGATGTGTATGCATTCGGAGTGTTGTTTCTGGAGCTTATTACCGCAAAGAGACCAAACGATTTGAGACCAGGGATCGAGCAATCTCTGTCAAGATGGGCGTCATTTCAGCTTCACGACCGTGGGAGTCTAGATGAGATTATTGATCCTGAGATTAAAGGAACATTATCCTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGGCCACCCATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAGAGAAGGTTCGAGATGGAAAAACGTGCTGCAGCGGAAGGTAAAGTAGTTGACACTTTCGAGAAATCCTTCCACACAACTAACACAGGGATTGTAAGACATCCTAACAAGACTGTCATTGGCATCAATGCTATCAATCGTCGCTTCTGGGTTCGTGCTATGATGGAGGACGCATCAAAGAACGGCGTCCTGGCCGTCCAAACGCTAAGGAACAACATAATGGCGTCTACTCTTTTGGCATCGACGGCGATAATGCTCTGTTCTCTAATCGCCGTCTTAATGACAAGCGGCGGCCACAGCGAATCTCCATTAGTCGTACTCGGCGACAGAAGCCAGTTCAGTTTCTCCATCAAATTTTTCGCCATTTTGCTTTGCTTTCTCGTAGCATTTTTGTTCAATGTTCAATCCATTAGGTATTATAGCCATGCCAGCATTCTGATCAACACGCCTTTCAAGAAAATTGCAATCGACGATCATAATCAACGGCTCACGGCGGAATACGTGGCGGCGACGGTGAACAGAGGCAGCTATTTCTGGTCGTTGGGATTGCGAGCTTTCTACTTCTCGTTTCCTCTGTTTTTGTGGATTTTTGGACCTATTCCTATGTTTTCTTCTTCATTTCTGCTTGTTTTTATGCTTTATTTCCTTGATGCTACTTTTGAATTCTGCTGGACGGATGGGAATTTGGATTACCTTCCTCAAAGAGACGAAGAAGAGGAAATTGGGAAATAG 4833 43.84 MLQQRLLTYFSVVVYSTILTSRVWAFTNPPDVIALQGLYSAMNYPLELKGWRKEGGDPCDESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHFSQNLPHTLSYMGRLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLNIQDNYFSGIIPKNFRNIPNLWIGGNRFRPEVNSPPWDFPLEKEPMVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGIVLLVGGLTLVVSFAALFFVFSMKKVHDKKINLKIGNMLPRSLPLGKAEDGSSTATEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLTELQSTTNKFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHRNIVTLLGYCVEHGQHILGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELTPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQLLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQSVKEFRPPMSEIVEHLTNLQRKMEMVKRATADGTEVDPFEKSFRSTNTGFLISCSILKNFVFSIAILSVYTPLCPSLPSGTKLRALLYSSVLVFLAILTSVVQCFTDPFDVIALLNLYSTLNYPPELKGWRTDGGDPCDGTWTGVFCVGSSVINLKLNRLNLSGNLGDQLYLLHNLKQLDASSNSILGEFPSGLPLNVTSVNLSHNVLSGPIGNAFSGLQNLVEMDLSYNNFTGDLPSSFASLTNINRLIGGNRFDVSNSPPWDFSVETTPLTRNNSSFPLTEPIIIEKCPYKKKGGKGGERLGPAGIAIVAGGGGFVIIFAALFIAICNTQICAKQRSMKHVNVSLPVSKAEDGYSTTPVGSPHILPLSSPDIGGGLNHACPTRHARTERGCSRSFSKRSWFPEKTKTYTVTELESATNKYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMAALSFTQEQQFLDVVCTASRMRHPNIVSLLGYSVENGQHLLAYEYVRNLSLDDALHSVAHNPLSSSVRIQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEGFMPKICDCGLSVLKPLAAQIAFADTGYFAPEYGQSGIDHTKSDVYAFGVLFLELITAKRPNDLRPGIEQSLSRWASFQLHDRGSLDEIIDPEIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRRFEMEKRAAAEGKVVDTFEKSFHTTNTGIVRHPNKTVIGINAINRRFWVRAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSGGHSESPLVVLGDRSQFSFSIKFFAILLCFLVAFLFNVQSIRYYSHASILINTPFKKIAIDDHNQRLTAEYVAATVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFSSSFLLVFMLYFLDATFEFCWTDGNLDYLPQRDEEEEIGK 1610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30746119 30764814 - CcPI632755_10g017200.1 Cco10g1720 190678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1720 1610 MobiDBLite consensus disorder prediction 349 363 - -
Cco10g1720 1610 SUPERFAMILY L domain-like 779 936 - -
Cco10g1720 1610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 695 IPR046959 -
Cco10g1720 1610 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
Cco10g1720 1610 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Cco10g1720 1610 Gene3D Transferase(Phosphotransferase) domain 1 1175 1390 - -
Cco10g1720 1610 Gene3D Transferase(Phosphotransferase) domain 1 493 715 - -
Cco10g1720 1610 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
Cco10g1720 1610 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 1062 1174 - -
Cco10g1720 1610 Gene3D Ribonuclease Inhibitor 782 957 IPR032675 -
Cco10g1720 1610 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1175 1378 - -
Cco10g1720 1610 Pfam Protein kinase domain 1097 1358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Protein kinase domain 416 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Leucine rich repeat N-terminal domain 785 822 IPR013210 -
Cco10g1720 1610 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cco10g1720 1610 Gene3D Phosphorylase Kinase; domain 1 1059 1174 - -
Cco10g1720 1610 Gene3D Phosphorylase Kinase; domain 1 378 492 - -
Cco10g1720 1610 SUPERFAMILY Protein kinase-like (PK-like) 1072 1363 IPR011009 -
Cco10g1720 1610 ProSiteProfiles Protein kinase domain profile. 1097 1371 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 Pfam Protein of unknown function, DUF599 1397 1587 IPR006747 -
Cco10g1720 1610 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Cco10g1720 1610 MobiDBLite consensus disorder prediction 341 363 - -
Cco10g1720 1610 Pfam Leucine Rich Repeat 896 918 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Cco10g1720 1610 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 782 887 - -
Cco10g1720 1610 SUPERFAMILY L domain-like 27 238 - -
Cco10g1720 1610 SMART LRR_typ_2 894 917 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 140 163 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 94 118 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 848 872 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 164 187 IPR003591 -
Cco10g1720 1610 SMART LRR_typ_2 188 211 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1672 Cco-Chr1:29460300 Cco10g1720 Cco-Chr10:30746119 1.80E-44 dispersed
Cco06g1647 Cco-Chr6:27073543 Cco10g1720 Cco-Chr10:30746119 2.50E-49 dispersed
Cco09g0147 Cco-Chr9:1310727 Cco10g1720 Cco-Chr10:30746119 1.10E-89 dispersed
Cco10g1720 Cco-Chr10:30746119 Cco10g0517 Cco-Chr10:6168963 4.70E-56 dispersed
Cco10g1720 Cco-Chr10:30746119 Cco07g1502 Cco-Chr7:29092005 6.30E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87169 PF00069 Pkinase 5.10E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1720 - - - 0.0